Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).
Builds interactive d3.js hierarchical visualisation easily. D3partitionR makes it easy to build and customize sunburst, circle treemap, treemap, partition chart, ...
This package creates text, LaTeX', Markdown, or Bootstrap-styled HTML-formatted odds ratio tables with confidence intervals for multiple logistic regression models.
This package provides tools for working with Gustavo Niemeyer's geohash coordinate system, including API for interacting with other common R GIS libraries.
Give advice about good practices when building R packages. Advice includes functions and syntax to avoid, package structure, code complexity, code formatting, etc.
An S4 implementation of Eq. (3) and Eq. (7) by David J. Hand and Robert J. Till (2001) <DOI:10.1023/A:1010920819831>.
Leading/lagging a panel, creating dummy variables, taking panel differences, looking for panel autocorrelations, and more. Implemented via a data.table back end.
An extension of animate.css that allows user to easily add animations to any UI element in shiny app using the elements id.
An efficient moment-free estimator of the Sharpe ratio, or signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Examples for Seamless R and C++ integration The Rcpp package contains a C++ library that facilitates the integration of R and C++ in various ways. This package provides some usage examples. Note that the documentation in this package currently does not cover all the features in the package. The site <https://gallery.rcpp.org> regroups a large number of examples for Rcpp'.
This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.
This package provides airline on-time data for all flights departing NYC in 2013. It also includes useful metadata on airlines, airports, weather, and planes.
Emacs Refactor (EMR) is a framework for providing language-specific refactoring in Emacs. It includes refactoring commands for a variety of languages, including elisp itself.
This package provides Python bindings to the Rust rpds crate for persistent data structures. It was written initially to support replacing python-pyrsistent.
This package consolidates a comprehensive set of information measurements, encompassing mutual information, conditional mutual information, interaction information, partial information decomposition, and part mutual information.
Compute an anomaly score for multivariate time series based on the k-nearest neighbors algorithm. Different computations of distances between time series are provided.
Two practical tests are provided for assessing whether multiple covariates in a treatment group and a matched control group are balanced in observational studies.
Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.
Sankey and alluvial diagrams visualise flows of quantities across stages in stacked bars. This package makes it easy to create such diagrams using ggplot2'.
Estimation of the effect of each income source on income inequalities based on the decomposition of Lerman and Yitzhaki (1985) <doi:10.2307/1928447>.
Multi-modal magnetic resonance imaging ('MRI') data from the Kirby21 reproducibility study <https://www.nitrc.org/projects/multimodal/>, including functional and structural imaging.
Model-based linear model trees adjusting for spatial correlation using a simultaneous autoregressive spatial lag, Wagner and Zeileis (2019) <doi:10.1111/geer.12146>.
This package provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.
Create R plots visualising ontological terms and the relationships between them with various graphical options - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.