Model estimation, dispersion testing and diagnosis of hyper-Poisson Saez-Castillo, A.J. and Conde-Sanchez, A. (2013) <doi:10.1016/j.csda.2012.12.009> and Conway-Maxwell-Poisson Huang, A. (2017) regression models.

Generates interactive circle plots with the nodes around the circumference and linkages between the connected nodes using hierarchical edge bundling via the D3 JavaScript library. See <http://d3js.org/> for more information on D3.

Unbiased estimators of overall and per-class thematic map accuracy and area published in Olofsson et al. (2014) <doi:10.1016/j.rse.2014.02.015> and Stehman (2014) <doi:10.1080/01431161.2014.930207>.

Computes the probability density function, the cumulative density function, quantile function, random numbers and measures of inference for the following families exponentiated generalized gull alpha power family, exponentiated gull alpha powerfamily, gull alpha power family.

Utilizes the Black-Scholes-Merton option pricing model to calculate key option analytics and perform graphical analysis of various option strategies. Provides functions to calculate the option premium and option greeks of European-style options.

Small self-contained plots for use in larger plots or to delegate plotting in other functions. Also contains a number of alternative color palettes and HSL color space based tools to modify colors or palettes.

This app enables interactive validation, interpretation and visualization of structural topic models from the stm package by Roberts and others (2014) . It also includes helper functions for model diagnostics and extracting data from effect estimates.

Estimate a sparse Gaussian state-space model with mixed frequency data via sparse principal components analysis and the Kalman filter and smoother. For more details see Franjic and Schweikert (2024) <doi:10.2139/ssrn.4733872>.

Asynchronous Reliable Extensible Sleek RPC Server for Guile. It's based on nREPL protocol and can be used for programmable interactions with a running guile processes, for implementing REPLs, IDEs, test runners or other tools.

An interface for rendering igraph objects as ggplot2 graphics within a normalized coordinate space. RGraphSpace implements new geometries that treat a graph as a single coherent object, synchronizing node and edge layers under standard aesthetic mappings. Node features are resolved on demand, supporting high-dimensional data without expanding node tables. Spatial alignment is available at the pixel level, with node coordinates anchored to pixel centers through a half-pixel offset, enabling precise node positioning over external reference frames such as images and maps.

This package implements nonparametric and semiparametric methods for comparing two survival distributions under non-proportional hazards (non-PH). The methods are based on the Receiver Operating Characteristic (ROC) curve length (Bantis et al. (2021) <doi:10.1002/sim.8869>) and the overlap coefficient (OVL) (Franco-Pereira et al. (2021) <doi:10.1177/09622802211046386>), as well as a joint ROC length-OVL-based approach. These methods do not require prior knowledge of the underlying non-PH pattern and can accommodate right, left, and doubly censored data.

Use rmarkdown partials, also know as child documents in knitr', so you can make components for HTML, PDF, and Word documents. The package provides various helper functions to make certain functions easier. You may want to use this package, if you want to flexibly summarise objects using a combination of figures, tables, text, and HTML widgets. Unlike HTML widgets, the output is Markdown and can hence be turn into other output formats than HTML. Currently does not play well with rmarkdown notebooks, not tested with Quarto.

TrackViewer offers multi-omics analysis with web based tracks and lollipops. Visualize mapped reads along with annotation as track layers for NGS datasets such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

This package translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

The file processes to produce (real) rulers; the author suggests printing them on transparent plastic and trimming for use as a real ruler. The rule widths are 0.05mm, which can be challenging for (old) laser printers.

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

This package implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

This package provides an htmlwidgets interface to apexcharts.js'. Apexcharts is a modern JavaScript charting library to build interactive charts and visualizations with simple API. Apexcharts examples and documentation are available here: <https://apexcharts.com/>.

Fetching data from Amazon Kinesis Streams using the Java-based MultiLangDaemon interacting with Amazon Web Services ('AWS') for easy stream processing from R. For more information on Kinesis', see <https://aws.amazon.com/kinesis>.

Packages required for the search path may be located in the CRAN repository, the system library, or a local directory. We automate determining the disposition of each required package, retrieving it, and loading it as needed.

Finite Population bootstrap algorithms to estimate the variance of the Horvitz-Thompson estimator for single-stage sampling. For a survey of bootstrap methods for finite populations, see Mashreghi et Al. (2016) <doi:10.1214/16-SS113>.

Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts. Details of the method are seen in Hawkins and Olwell (2012): Cumulative sum charts and charting for quality improvement, Springer Science & Business Media.

Find the numbers of test tubes that can be balanced in centrifuge rotors and show various ways to load them. Refer to Pham (2020) <doi:10.31224/osf.io/4xs38> for more information on package functionality.

This package provides simple, reproducible access to datasets from the Chicago Open Data portal <https://data.cityofchicago.org/>. Functions return results as tidy tibbles and support optional filtering, sorting, and row limits via the Socrata API.