Read bigWig and bigBed files using libBigWig. This package provides lightweight access to the binary bigWig and bigBed formats developed by the UCSC Genome Browser group.

Bio::Kseq provides ruby bindings to the kseq.h FASTA and FASTQ parsing code. It provides a fast iterator over sequences and their quality scores.

This is a lightweight package for computing different kinds of correlations. These correlations include partial correlations, Bayesian correlations, multilevel correlations, polychoric correlations, biweight correlations, distance correlations and more.

This package provides functionality to benchmark your CPU and compare against other CPUs. Also provides functions for obtaining system specifications, such as RAM, CPU type, and R version.

Parinfer is a plugin for Kakoune, Vim, Neovim and Emacs that infers parentheses and indentation. This library can be called from other editors that can load dynamic libraries.

This package provides access to and analysis of data from "The Red Book of Endemic Plants of Peru" (León, B., Roque, J., Ulloa, C., Jorgensen, P.M., Pitman, N., Cano, A. 2006) <doi:10.15381/rpb.v13i2.1782>. This package offers comprehensive taxonomic, geographic, and conservation information about Peru's endemic plant species. It includes functions to verify species inclusion, obtain updated taxonomic details, and explore the dataset.

Implementation of the MaxRank normalization method, which enables standardization of Rank Abundance Distributions (RADs) to a specified number of ranks. Rank abundance distributions are widely used in biology and ecology to describe species abundances, and are mathematically equivalent to complementary cumulative distribution functions (CCDFs) used in physics, linguistics, sociology, and other fields. The method is described in Saeedghalati et al. (2017) <doi:10.1371/journal.pcbi.1005362>.

Ruby Bindings for the GNU LibIDN library, an implementation of the Stringprep, Punycode and IDNA specifications. These are used to encode and decode internationalized domain + names according to the IDNA2003 specifications.

Included are the most important parts of the Stringprep, Punycode and IDNA APIs like performing Stringprep processings, encoding to and decoding from Punycode strings and converting entire domain names to and from the ACE encoded form.

This reduced piecewise exponential survival software implements the likelihood ratio test and backward elimination procedure in Han, Schell, and Kim (2012 <doi:10.1080/19466315.2012.698945>, 2014 <doi:10.1002/sim.5915>), and Han et al. (2016 <doi:10.1111/biom.12590>). Inputs to the program can be either times when events/censoring occur or the vectors of total time on test and the number of events. Outputs of the programs are times and the corresponding p-values in the backward elimination. Details about the model and implementation are given in Han et al. 2014. This program can run in R version 3.2.2 and above.

Build a Dockerfile straight from your R session. dockerfiler allows you to create step by step a Dockerfile, and provide convenient tools to wrap R code inside this Dockerfile.

This package provides the user with an interactive application which can be used to facilitate the planning of dose finding studies by applying the theory of optimal experimental design.

Profiles datasets (collecting statistics and informative summaries about that data) on data frames and ODBC tables: maximum, minimum, mean, standard deviation, nulls, distinct values, data patterns, data/format frequencies.

This package provides a goodness-of-fit test for elliptical distributions with diagnostic capabilities. Gilles R. Ducharme, Pierre Lafaye de Micheaux (2020) <doi:10.1016/j.jmva.2020.104602>.

This package provides statistical tests and graphics for assessing tests of equivalence. Such tests have similarity as the alternative hypothesis instead of the null. Sample data sets are included.

Errors in data can be located and removed using validation rules from package validate'. See also Van der Loo and De Jonge (2018) <doi:10.1002/9781118897126>, chapter 7.

Estimate confidence intervals for mean, proportion, mean difference for unpaired and paired samples and proportion difference. Plot the confidence intervals. Generate documents explaining the statistical result step by step.

Single imputation based on the Ensemble Conditional Trees (i.e. Cforest algorithm Strobl, C., Boulesteix, A. L., Zeileis, A., & Hothorn, T. (2007) <doi:10.1186/1471-2105-8-25>).

API wrapper to gather news stories, media information and tags from the mediacloud.org API, based on a multilevel query <https://mediacloud.org/>. A personal API key is required.

This package provides tools for econometric production analysis with the Symmetric Normalized Quadratic (SNQ) profit function, e.g. estimation, imposing convexity in prices, and calculating elasticities and shadow prices.

Executes simple parametric models for right-censored survival data. Functionality emulates capabilities in Minitab', including fitting right-censored data, assessing fit, plotting survival functions, and summary statistics and probabilities.

Calculates the lexicogrammatical and functional features described by Biber (1985) <doi:10.1515/ling.1985.23.2.337> and widely used for text-type, register, and genre classification tasks.

Predicts the most common race of a surname and based on U.S. Census data, and the most common first named based on U.S. Social Security Administration data.

Local Correlation Integral (LOCI) method for outlier identification is implemented here. The LOCI method developed here is invented in Breunig, et al. (2000), see <doi:10.1145/342009.335388>.

Semantic Versions allow for standardized management versions. This package implements semantic versioning handling in R. using R6 to create a mutable object that can handle deciphering and checking versions.