An alternative canonical correlation/redundancy analysis function, with associated print, plot, and summary methods. A method for generating helio plots is also included.

This package provides covariate-adjusted comparison of two groups of right censored data, where the binary group variable has separate short-term and long-term effects on the hazard function, while effects of covariates such as age, blood pressure, etc. are proportional on the hazard. The model was studied in Yang and Prentice (2015) <doi:10.1002/sim.6453> and it extends the two sample version of the short-term and long-term hazard ratio model proposed in Yang and Prentice (2005) <doi:10.1093/biomet/92.1.1>. The model extends the usual Cox proportional hazards model to allow more flexible hazard ratio patterns, such as gradual onset of effect, diminishing effect, and crossing hazard or survival functions. This package provides the following: 1) point estimates and confidence intervals for model parameters; 2) point estimate and confidence interval of the average hazard ratio; and 3) plots of estimated hazard ratio function with point-wise and simultaneous confidence bands.

Analyzing performances of cricketers and cricket teams based on yaml match data from Cricsheet <https://cricsheet.org/>.

This package performs nearest neighbor-based imputation using one or more alternative approaches to processing multivariate data. These include methods based on canonical correlation: analysis, canonical correspondence analysis, and a multivariate adaptation of the random forest classification and regression techniques of Leo Breiman and Adele Cutler. Additional methods are also offered. The package includes functions for comparing the results from running alternative techniques, detecting imputation targets that are notably distant from reference observations, detecting and correcting for bias, bootstrapping and building ensemble imputations, and mapping results.

This collection of data exploration tools was developed at Yale University for the graphical exploration of complex multivariate data; barcode and gpairs now have their own packages. The big.read.table() function provided here may be useful for large files when only a subset is needed (but please see the note in the help page for this function).

This package provides a graphical user interface for the yuima package.

Write YAML front matter for R Markdown and related documents. Work with YAML objects more naturally and write the resulting YAML to your clipboard or to YAML files related to your project.

Fits yield curves using Nelson-Siegel (1987) <doi:10.1086/296409>, Svensson (1994) <doi:10.3386/w4871>, and cubic spline methods. Extracts forward rates, discount factors, and par rates from fitted curves. Computes duration and convexity risk measures. Computes Z-spread and key rate durations. Provides principal component decomposition following Litterman and Scheinkman (1991) <doi:10.3905/jfi.1991.692347>, carry and roll-down analysis, and slope measures. All methods are pure computation with no external dependencies beyond base R; works with yield data from any source.

For any spending function specified by the user, this package provides corresponding boundaries for interim testing using the adaptively weighted log-rank test developed by Yang and Prentice (2010 <doi:10.1111/j.1541-0420.2009.01243.x>). The package uses a re-sampling method to obtain stopping boundaries at the interim looks.The output consists of stopping boundaries and observed values of the test statistics at the interim looks, along with nominal p-values defined as the probability of the test exceeding the specific observed test statistic value or critical value, regardless of the test behavior at other looks. The asymptotic validity of the stopping boundaries is established in Yang (2018 <doi:10.1002/sim.7958>).

An implementation of equilibrium-based yield per recruit methods. Yield per recruit methods can used to estimate the optimal yield for a fish population as described by Walters and Martell (2004) <isbn:0-691-11544-3>. The yield can be based on the number of fish caught (or harvested) or biomass caught for all fish or just large (trophy) individuals.

Simple and efficient access to Yahoo Finance's screener API <https://finance.yahoo.com/research-hub/screener/> for querying and retrieval of financial data. The core functionality abstracts the complexities of interacting with Yahoo Finance APIs, such as session management, crumb and cookie handling, query construction, pagination, and JSON payload generation. This abstraction allows users to focus on filtering and retrieving data rather than managing API details. Use cases include screening across a range of security types including equities, mutual funds, ETFs, indices, and futures. The package supports advanced query capabilities, including logical operators, nested filters, and customizable payloads. It automatically handles pagination to ensure efficient retrieval of large datasets by fetching results in batches of up to 250 entries per request. Filters can be dynamically defined to accommodate a wide range of screening needs. The implementation leverages standard HTTP libraries to handle API interactions efficiently and provides support for both R and Python to ensure accessibility for a broad audience.

This package provides a collection of string functions designed for writing compact and expressive R code. yasp (Yet Another String Package) is simple, fast, dependency-free, and written in pure R. The package provides: a coherent set of abbreviations for paste() from package base with a variety of defaults, such as p() for "paste" and pcc() for "paste and collapse with commas"; wrap(), bracket(), and others for wrapping a string in flanking characters; unwrap() for removing pairs of characters (at any position in a string); and sentence() for cleaning whitespace around punctuation and capitalization appropriate for prose sentences.

This package provides a collection of lightweight helper functions (imps) both for interactive use and for inclusion within other packages. These include functions for minimal input assertions, visualising colour palettes, quoting user input, searching rows of a data frame and capturing string tokens.

Simulation and Inference for SDEs and Other Stochastic Processes.

This package provides functions to manage taxonomy when lineages are described with strings and ranks separated with special patterns like "|*__" or ";*__".

Procedures to perform consensus clustering starting from a dissimilarity matrix or a data matrix. It's allowed to select if the subsampling has to be by samples or features. In case of computational heavy load, the procedures can run in parallel.

Semiparametric modeling of lifetime data with crossing survival curves via Yang and Prentice model with piecewise exponential baseline distribution. Details about the model can be found in Demarqui and Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via likelihood-based and Bayesian approaches. The package also provides point and interval estimation for the crossing survival times.

Compute the standard expected years of life lost (YLL), as developed by the Global Burden of Disease Study (Murray, C.J., Lopez, A.D. and World Health Organization, 1996). The YLL is based on comparing the age of death to an external standard life expectancy curve. It also computes the average YLL, which highlights premature causes of death and brings attention to preventable deaths (Aragon et al., 2008).

Analyze data from behavioral experiments conducted using MED-PC software developed by Med Associates Inc. Includes functions to fit exponential and hyperbolic models for delay discounting tasks, exponential mixtures for inter-response times, and Gaussian plus ramp models for peak procedure data, among others. For more details, refer to Alcala et al. (2023) <doi:10.31234/osf.io/8aq2j>.

The generalized construction methods for magic squares, inspired by the ancient Chinese mathematician Yang Hui's classical work "Xu Gu Zhai Qi Suan Fa". These methods can construct 4n-order magic squares and 2(2n+1)-order magic squares.

Setting layout through YAML headers in R-Markdown documents, enabling their automatic generation. Functions and methods may summarize R objects in automatic reports, for instance check-lists and further reports applied to the packages taxlist and vegtable'.

Test of linearity originally proposed by Yatchew (1997) <doi:10.1016/S0165-1765(97)00218-8> and improved by de Chaisemartin & D'Haultfoeuille (2024) <doi:10.2139/ssrn.4284811> to be robust under heteroskedasticity.

This package contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://bookdown.org/ndphillips/YaRrr/>.

This package provides helper functions to perform Bayesian model averaging using Markov chain Monte Carlo samples from separate models. Calculates weights and obtains draws from the model-averaged posterior for quantities of interest specified by the user. Weight calculations can be done using marginal likelihoods or log-predictive likelihoods as in Ando, T., & Tsay, R. (2010) <doi:10.1016/j.ijforecast.2009.08.001>.