Simulate, estimate and forecast a wide range of regression based dynamic models for bounded time series, covering the most commonly applied models in the literature. The main calculations are done in FORTRAN, which translates into very fast algorithms.
Estimation of counterfactual outcomes for multiple values of continuous interventions at different time points, and plotting of causal dose-response curves. Details are given in Schomaker, McIlleron, Denti, Diaz (2024) <doi:10.48550/arXiv.2305.06645>.
Model fitting and evaluation tools for double generalized linear models (DGLMs). This class of models uses one generalized linear model (GLM) to fit the specified response and a second GLM to fit the deviance of the first model.
This package implements the daily based Morgan-Morgan-Finney (DMMF) soil erosion model (Choi et al., 2017 <doi:10.3390/w9040278>) for estimating surface runoff and sediment budgets from a field or a catchment on a daily basis.
Applies dynamic structural equation models to time-series data with generic and simplified specification for simultaneous and lagged effects. Methods are described in Thorson et al. (2024) "Dynamic structural equation models synthesize ecosystem dynamics constrained by ecological mechanisms.".
Presents a statistical method that uses a recursive algorithm for signal extraction. The method handles a non-parametric estimation for the correlation of the errors. See "Krivobokova", "Serra", "Rosales" and "Klockmann" (2021) <arXiv:1812.06948> for details.
Feature Ordering by Conditional Independence (FOCI) is a variable selection algorithm based on the measure of conditional dependence. For more information, see the paper: Azadkia and Chatterjee (2019),"A simple measure of conditional dependence" <arXiv:1910.12327>.
Goodness-of-fit tests for skew-normal, gamma, inverse Gaussian, log-normal, Weibull', Frechet', Gumbel, normal, multivariate normal, Cauchy, Laplace or double exponential, exponential and generalized Pareto distributions. Parameter estimators for gamma, inverse Gaussian and generalized Pareto distributions.
Estimating trait heritability and handling overfitting. This package includes a collection of functions for (1) estimating genetic variance-covariances and calculate trait heritability; and (2) handling overfitting by calculating the variance components and the heritability through cross validation.
Two main functionalities are provided. One of them is predicting values with k-nearest neighbors algorithm and the other is optimizing the parameters k and d of the algorithm. These are carried out in parallel using multiple threads.
This package creates and manages a PostgreSQL database suitable for storing fisheries data and aggregating ready for use within a Gadget <https://gadget-framework.github.io/gadget2/> model. See <https://mareframe.github.io/mfdb/> for more information.
This package provides lightweight R wrappers for the OKX REST API, covering endpoints for market data, trading, account management, asset balances, and copy trading. The upstream API reference is available at <https://www.okx.com/docs-v5/en/>.
Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
This package contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.
Agglomerative hierarchical clustering with a bespoke distance measure based on medication similarities in the Anatomical Therapeutic Chemical Classification System, medication timing and medication amount or dosage. Tools for summarizing, illustrating and manipulating the cluster objects are also available.
The zlog package offers functions to transform laboratory measurements into standardised z or z(log)-values. Therefore the lower and upper reference limits are needed. If these are not known they could be estimated from a given sample.
Originally inspired by Unity IMGUI (immediate mode GUI API).
Designed as an auxiliary module for raylib to create simple GUI interfaces using raylib graphic style (simple colors, plain rectangular shapes, wide borders...) but it can be adapted to other engines/frameworks.
Rspamd is an advanced spam filtering system that allows evaluation of messages by a number of rules including regular expressions, statistical analysis and custom services such as URL black lists. Each message is analysed by Rspamd and given a spam score.
It implemented Age-Period-Interaction Model (APC-I Model) proposed in the paper of Liying Luo and James S. Hodges in 2019. A new age-period-cohort model for describing and investigating inter-cohort differences and life course dynamics.
This package provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM). See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
Finds the best block diagonal matrix approximation of a symmetric matrix. This can be exploited for divisive hierarchical clustering using singular vectors, named HC-SVD. The method is described in Bauer (202Xa) <doi:10.48550/arXiv.2308.06820>.
Citation File Format ('CFF') version 1.2.0 <doi:10.5281/zenodo.5171937> is a human- and machine-readable file format for software citation metadata. Core utilities generate, read, write and validate Citation File Format metadata for R packages.
Calculates pointwise confidence intervals for the cumulative distribution function of the event time for current status data, data where each individual is assessed at one time to see if they had the event or not by the assessment time.
Package for the analysis of categorical functional data. The main purpose is to compute an encoding (real functional variable) for each state <doi:10.3390/math9233074>. It also provides functions to perform basic statistical analysis on categorical functional data.