GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

This package manages a text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog.This simplifies access to a snapshot of EBI GWASCAT. More current images can be obtained using the gwascat package.

TrackViewer offers multi-omics analysis with web based tracks and lollipops. Visualize mapped reads along with annotation as track layers for NGS datasets such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

This package provides glob-matched recursive file system walking. Based on both rust-walkdir and rust-ignore, this crate inherits many goodies from both, such as limiting search depth and amount of open file descriptors.

This package provides glob-matched recursive file system walking. Based on both rust-walkdir and rust-ignore, this crate inherits many goodies from both, such as limiting search depth and amount of open file descriptors.

The file processes to produce (real) rulers; the author suggests printing them on transparent plastic and trimming for use as a real ruler. The rule widths are 0.05mm, which can be challenging for (old) laser printers.

Model that assesses daily exposure to air pollution, which considers daily population mobility on a geographical scale and the spatial and temporal variability of pollutant concentrations, in addition to traditional parameters such as exposure time and pollutant concentration.

Logic game in the style of the early 1980s home computers that can be played in the R console. This game is inspired by Mastermind, a game that became popular in the 1970s. Can you break the code?

This package creates a new chars class which looks like a string but is actually a vector of individual characters, making strings iterable. This class enables vector operations on strings such as reverse, sort, head, and set operations.

This package provides functions for finding smooth interpolating curves connecting a series of points in the plane. Curves may be open or closed, that is, with the first and last point of the curve at the initial point.

Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Interactive User Interface will pop up. Apps Works by simple upload of files in CSV format.

Provide functions to make estimate the number of states for a hidden Markov model (HMM) using marginal likelihood method proposed by the authors. See the Manual.pdf file a detail description of all functions, and a detail tutorial.

This package implements adaptive landscape methods first described by Polly et al. (2016) <doi:10.1080/02724634.2016.1111225> for the integration, analysis and visualization of biological trait data on a phenotypic morphospace - typically defined by shape metrics.

This package provides a visualization tool for multivariate data. This package maintains the original functionality of a radar chart and avoids potential misuse of its connected regions, with newly added features to better assist multi-criteria decision-making.

Shows the scatter plot along with the fitted regression lines. It depicts min, max, the three quartiles, mean, and sd for each variable. It also depicts sd-line, sd-box, r, r-square, prediction boundaries, and regression outliers.

Download summary files from Census Bureau <https://www2.census.gov/> and extract data, in particular high resolution data at block, block group, and tract level, from decennial census and American Community Survey 1-year and 5-year estimates.

Applies affine and similarity transformations on vector spatial data (sp objects). Transformations can be defined from control points or directly from parameters. If redundant control points are provided Least Squares is applied allowing to obtain residuals and RMSE.

This package provides functions to securely retrieve secrets from a Bitwarden Secrets Manager vault using the Bitwarden CLI', enabling secret and configuration management within R packages and workflows. For more information visit <https://bitwarden.com/products/secrets-manager/>.

This package provides classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

This package provides microarray data (from the Illumina Ref-8 BeadChips platform) and phenotype-level data from an epidemiological investigation of benzene exposure, packaged using SummarizedExperiemnt, for use as an example with the biotmle R package.

This package handles very large numbers in R. Real numbers are held using their natural logarithms, plus a logical flag indicating sign. The package includes a vignette that gives a step-by-step introduction to using S4 methods.

Randomization tests for the statistical comparison of i = two or more individual-based, sample-based or coverage-based rarefaction curves. The ecological null hypothesis is that the i samples were all drawn randomly from a single assemblage, with (necessarily) a single underlying species abundance distribution. The biogeographic null hypothesis is that the i samples were all drawn from different assemblages that, nonetheless, share similar species richness and species abundance distributions. Functions are described in L. Cayuela, N.J. Gotelli & R.K. Colwell (2015) <doi:10.1890/14-1261.1>.

This package contains a function to randomize subjects, patients in groups of sequences (treatment sequences). If a blocksize is given, the randomization will be done within blocks. The randomization may be controlled by a Wald-Wolfowitz runs test. Functions to obtain the p-value of that test are included. The package is mainly intended for randomization of bioequivalence studies but may be used also for other clinical crossover studies. Contains two helper functions sequences() and williams() to get the sequences of commonly used designs in BE studies.