This package provides a partialised class that extends the partialising function of purrr by making it easier to change the arguments. This is similar to the function-like object in Julia (<https://docs.julialang.org/en/v1/manual/methods/#Function-like-objects>).

This package provides an interactive Kanban board widget for shiny applications. It allows users to manage tasks using a drag-and-drop interface and offers customizable styling options. shinykanban is ideal for project management, task tracking, and agile workflows within shiny apps.

Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.

Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow.

The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.

This package provides long description of genes collected from the RefSeq database. The text in "COMMENT" section started with "Summary" is extracted as the description of the gene. The long text descriptions can be used for analysis such as text mining.

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

This companion package extends the package robmed (Alfons, Ates & Groenen, 2022b; <doi:10.18637/jss.v103.i13>) in various ways. Most notably, it provides a graphical user interface for the robust bootstrap test ROBMED (Alfons, Ates & Groenen, 2022a; <doi:10.1177/1094428121999096>) to make the method more accessible to less proficient R users, as well as functions to export the results as a table in a Microsoft Word or Microsoft Powerpoint document, or as a LaTeX table. Furthermore, the package contains a shiny app to compare various bootstrap procedures for mediation analysis on simulated data.

Weave and tangle drivers for Sweave extending the standard drivers. RweaveExtraLatex and RtangleExtra provide options to completely ignore code chunks on weaving, tangling, or both. Chunks ignored on weaving are not parsed, yet are written out verbatim on tangling. Chunks ignored on tangling may be evaluated as usual on weaving, but are completely left out of the tangled scripts. The driver RtangleExtra also provides options to control the separation between code chunks in the tangled script, and to specify the extension of the file name (or remove it entirely) when splitting is selected.

Create ASCII line graphs of a time series directly on your terminal in an easy way. There are some configurations you can add to make the plot the way you like. This project was inspired by the original asciichart package by Igor Kroitor.

This package provides a shiny app to discover cocktails. The app allows one to search for cocktails by ingredient, filter on rating, and number of ingredients. The package also contains data with the ingredients of nearly 26 thousand cocktails scraped from the web.

Support functions for R-based EQUAL-STATS software which automatically classifies the data and performs appropriate statistical tests. EQUAL-STATS software is a shiny application with an user-friendly interface to perform complex statistical analysis. Gurusamy,K (2024)<doi:10.5281/zenodo.13354162>.

Feature flags allow developers to turn features of their software on and off in form of configuration. This package provides functions for creating feature flags in code. It exposes an interface for defining own feature flags which are enabled based on custom criteria.

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Multi-core replication function to make it easier to do fast Monte Carlo simulation. Based on the mcreplicate() function from the rethinking package. The rethinking package requires installing rstan', which is onerous to install, while also not adding capabilities to this function.

Non-parametric methods as local normal regression, polynomial local regression and penalized cubic B-splines regression are used to estimate quantiles curves. See Fan and Gijbels (1996) <doi:10.1201/9780203748725> and Perperoglou et al.(2019) <doi:10.1186/s12874-019-0666-3>.

Create Shiny Apps with collapsible vertical panels. This package provides a new visual arrangement for elements on top of Shiny'. Use the expand and collapse capabilities to leverage web applications with many elements to focus the user attention on the panel of interest.

Calculates graph theoretic scagnostics. Scagnostics describe various measures of interest for pairs of variables, based on their appearance on a scatterplot. They are useful tool for discovering interesting or unusual scatterplots from a scatterplot matrix, without having to look at every individual plot.

Estimate the four parameters of stable laws using maximum likelihood method, generalised method of moments with finite and continuum number of points, iterative Koutrouvelis regression and Kogon-McCulloch method. The asymptotic properties of the estimators (covariance matrix, confidence intervals) are also provided.

This package provides two classes extending data.table class. Simple tableList class wraps data.table and any additional structures together. More complex tableMatrix class combines data.table and matrix'. See <http://github.com/InferenceTechnologies/tableMatrix> for more information and examples.

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to count matrix summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.

ggtreeExtra extends the method for mapping and visualizing associated data on phylogenetic tree using ggtree. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by ggtree with the grammar of ggplot2.