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r-systemfonts 1.1.0
Dependencies: fontconfig-minimal@2.14.0 freetype@2.13.0 zlib@1.3
Propagated dependencies: r-cpp11@0.5.0 r-lifecycle@1.0.4
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/r-lib/systemfonts
Licenses: Expat
Synopsis: System native font finding
Description:

This package provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries for finding font files that can then be used further by e.g. graphic devices.

ghc-tf-random 0.5
Dependencies: ghc-primitive@0.7.3.0 ghc-random@1.2.1.1
Channel: guix
Location: gnu/packages/haskell-xyz.scm (gnu packages haskell-xyz)
Home page: https://hackage.haskell.org/package/tf-random
Licenses: Modified BSD
Synopsis: High-quality splittable pseudorandom number generator
Description:

This package contains an implementation of a high-quality splittable pseudorandom number generator. The generator is based on a cryptographic hash function built on top of the ThreeFish block cipher. See the paper "Splittable Pseudorandom Number Generators Using Cryptographic Hashing" by Claessen, Pałka for details and the rationale of the design.

r-adklakedata 0.6.1
Propagated dependencies: r-rappdirs@0.3.3 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://cran.r-project.org/package=adklakedata
Licenses: Expat
Synopsis: Adirondack Long-Term Lake Data
Description:

Package for the access and distribution of Long-term lake datasets from lakes in the Adirondack Park, northern New York state. Includes a wide variety of physical, chemical, and biological parameters from 28 lakes. Data are from multiple collection organizations and have been harmonized in both time and space for ease of reuse.

r-arcgeocoder 0.2.1
Propagated dependencies: r-jsonlite@1.8.9 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://dieghernan.github.io/arcgeocoder/
Licenses: Expat
Synopsis: Geocoding with the 'ArcGIS' REST API Service
Description:

Lite interface for finding locations of addresses or businesses around the world using the ArcGIS REST API service <https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>. Address text can be converted to location candidates and a location can be converted into an address. No API key required.

r-bnnsurvival 0.1.5
Propagated dependencies: r-rcpp@1.0.13-1 r-prodlim@2024.06.25 r-pec@2023.04.12
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://cran.r-project.org/package=bnnSurvival
Licenses: GPL 3
Synopsis: Bagged k-Nearest Neighbors Survival Prediction
Description:

This package implements a bootstrap aggregated (bagged) version of the k-nearest neighbors survival probability prediction method (Lowsky et al. 2013). In addition to the bootstrapping of training samples, the features can be subsampled in each baselearner to break the correlation between them. The Rcpp package is used to speed up the computation.

r-healthyr-ai 0.1.0
Propagated dependencies: r-yardstick@1.3.1 r-workflows@1.1.4 r-tune@1.2.1 r-tidyr@1.3.1 r-tibble@3.2.1 r-rlang@1.1.4 r-recipes@1.1.0 r-purrr@1.0.2 r-parsnip@1.2.1 r-modeltime@1.3.1 r-magrittr@2.0.3 r-h2o@3.44.0.3 r-ggrepel@0.9.6 r-ggplot2@3.5.1 r-forcats@1.0.0 r-dplyr@1.1.4 r-dials@1.3.0 r-broom@1.0.7
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: https://www.spsanderson.com/healthyR.ai/
Licenses: Expat
Synopsis: The Machine Learning and AI Modeling Companion to 'healthyR'
Description:

Hospital machine learning and ai data analysis workflow tools, modeling, and automations. This library provides many useful tools to review common administrative hospital data. Some of these include predicting length of stay, and readmits. The aim is to provide a simple and consistent verb framework that takes the guesswork out of everything.

r-modturpoint 0.1.0
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=modTurPoint
Licenses: GPL 3
Synopsis: Estimate ED50 Based on Modified Turning Point Method
Description:

Turning point method is a method proposed by Choi (1990) <doi:10.2307/2531453> to estimate 50 percent effective dose (ED50) in the study of drug sensitivity. The method has its own advantages for that it can provide robust ED50 estimation. This package contains the modified function of Choi's turning point method.

r-metricminer 1.0.0
Propagated dependencies: r-yaml@2.3.10 r-tidyr@1.3.1 r-stringr@1.5.1 r-rvest@1.0.4 r-rprojroot@2.0.4 r-purrr@1.0.2 r-openssl@2.2.2 r-magrittr@2.0.3 r-lubridate@1.9.3 r-jsonlite@1.8.9 r-janitor@2.2.0 r-httr@1.4.7 r-googlesheets4@1.1.1 r-googledrive@2.1.1 r-gh@1.4.1 r-getpass@0.2-4 r-dplyr@1.1.4 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://github.com/fhdsl/metricminer
Licenses: GPL 3
Synopsis: Mine Metrics from Common Places on the Web
Description:

Mine metrics on common places on the web through the power of their APIs (application programming interfaces). It also helps make the data in a format that is easily used for a dashboard or other purposes. There is an associated dashboard template and tutorials that are underdevelopment that help you fully utilize metricminer'.

r-synthesizer 0.4.0
Propagated dependencies: r-randomforest@4.7-1.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/markvanderloo/synthesizer
Licenses: FSDG-compatible
Synopsis: Synthesize Data Based on Empirical Quantile Functions and Rank Order Matching
Description:

Data is synthesized using a combination of inverse transform sampling using the empirical quantile functions for each variable, and then copying the rank order structure from the original dataset. The syntesizer method has a tunable parameter allowing to gradually move from realistic and possibly unsafe synthetic data to decorrelated data of less utility.

r-demultiplex 1.0.2-1.6e2a142
Propagated dependencies: r-kernsmooth@2.23-24 r-reshape2@1.4.4 r-rtsne@0.17 r-shortread@1.64.0 r-stringdist@0.9.12
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/chris-mcginnis-ucsf/MULTI-seq
Licenses: CC0
Synopsis: MULTI-seq pre-processing and classification tools
Description:

deMULTIplex is an R package for analyzing single-cell RNA sequencing data generated with the MULTI-seq sample multiplexing method. The package includes software to

  1. Convert raw MULTI-seq sample barcode library FASTQs into a sample barcode UMI count matrix, and

  2. Classify cell barcodes into sample barcode groups.

r-zonebuilder 0.0.2
Propagated dependencies: r-rcolorbrewer@1.1-3 r-sf@1.0-19
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/zonebuilders/zonebuilder
Licenses: GPL 3
Synopsis: Create and explore geographic zoning systems
Description:

This package provides functions, documentation and example data to help divide geographic space into discrete polygons (zones). The functions are motivated by research into the merits of different zoning systems. A flexible ClockBoard zoning system is provided, which breaks-up space by concentric rings and radial lines emanating from a central point.

julia-realdot 0.1.0
Channel: guix
Location: gnu/packages/julia-xyz.scm (gnu packages julia-xyz)
Home page: https://github.com/JuliaMath/RealDot.jl
Licenses: Expat
Synopsis: Compute realdot efficiently
Description:

This package only contains and exports a single function realdot(x, y). It computes real(LinearAlgebra.dot(x, y)) while avoiding computing the imaginary part of LinearAlgebra.dot(x, y) if possible. The real dot product is useful when one treats complex numbers as embedded in a real vector space.

perl-ref-util 0.204
Propagated dependencies: perl-ref-util-xs@0.117
Channel: guix
Location: gnu/packages/perl.scm (gnu packages perl)
Home page: https://metacpan.org/release/Ref-Util
Licenses: X11
Synopsis: Utility functions for checking references
Description:

Ref::Util introduces several functions to help identify references in a smarter (and usually faster) way. The difference with conventional approach:

  • No comparison against a string constant

  • Supports blessed variables

  • Supports tied variables and magic

  • Ignores overloading

  • Ignores subtle types

  • Usually faster

r-causaldisco 0.9.1
Propagated dependencies: r-scales@1.3.0 r-rcolorbrewer@1.1-3 r-pcalg@2.7-12 r-igraph@2.1.1 r-gtools@3.9.5 r-clipr@0.8.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/annennenne/causalDisco
Licenses: GPL 2
Synopsis: Tools for Causal Discovery on Observational Data
Description:

Various tools for inferring causal models from observational data. The package includes an implementation of the temporal Peter-Clark (TPC) algorithm. Petersen, Osler and Ekstrøm (2021) <doi:10.1093/aje/kwab087>. It also includes general tools for evaluating differences in adjacency matrices, which can be used for evaluating performance of causal discovery procedures.

r-doudpackage 2.1.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-stringi@1.8.4 r-purrr@1.0.2 r-kableextra@1.4.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=doudpackage
Licenses: GPL 3+
Synopsis: Create Elegant Table 1 in HTML for Bio-Statistics
Description:

This package creates the "table one" of bio-medical papers. Fill it with your data and the name of the variable which you'll make the group(s) out of and it will make univariate, bivariate analysis and parse it into HTML. It also allows you to visualize all your data with graphic representation.

r-ezfragility 1.0.3
Propagated dependencies: r-viridis@0.6.5 r-rlang@1.1.4 r-reshape2@1.4.4 r-ramify@0.3.3 r-progress@1.2.3 r-glue@1.8.0 r-ggtext@0.1.2 r-ggplot2@3.5.1 r-foreach@1.5.2
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://cran.r-project.org/package=EZFragility
Licenses: GPL 3+
Synopsis: Compute Neural Fragility for Ictal iEEG Time Series
Description:

This package provides tools to compute the neural fragility matrix from intracranial electrocorticographic (iEEG) recordings, enabling the analysis of brain dynamics during seizures. The package implements the method described by Li et al. (2017) <doi:10.23919/ACC.2017.7963378> and includes functions for data preprocessing (`Epoch`), fragility computation (`calcAdjFrag`), and visualization.

r-electionsbr 0.5.0
Propagated dependencies: r-readr@2.1.5 r-magrittr@2.0.3 r-httr@1.4.7 r-haven@2.5.4 r-dplyr@1.1.4 r-data-table@1.16.2 r-curl@6.0.1
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://electionsbr.com/novo/
Licenses: GPL 2+
Synopsis: R Functions to Download and Clean Brazilian Electoral Data
Description:

Offers a set of functions to easily download and clean Brazilian electoral data from the Superior Electoral Court and CepespData websites. Among other features, the package retrieves data on local and federal elections for all positions (city councilor, mayor, state deputy, federal deputy, governor, and president) aggregated by state, city, and electoral zones.

r-glmmcosinor 0.2.1
Propagated dependencies: r-scales@1.3.0 r-rlang@1.1.4 r-lme4@1.1-35.5 r-glmmtmb@1.1.10 r-ggplot2@3.5.1 r-ggforce@0.4.2 r-cowplot@1.1.3 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://github.com/ropensci/GLMMcosinor
Licenses: GPL 3+
Synopsis: Fit a Cosinor Model Using a Generalized Mixed Modeling Framework
Description:

Allows users to fit a cosinor model using the glmmTMB framework. This extends on existing cosinor modeling packages, including cosinor and circacompare', by including a wide range of available link functions and the capability to fit mixed models. The cosinor model is described by Cornelissen (2014) <doi:10.1186/1742-4682-11-16>.

r-healthyr-ts 0.3.1
Propagated dependencies: r-workflowsets@1.1.0 r-timetk@2.9.0 r-tidyr@1.3.1 r-tibble@3.2.1 r-stringi@1.8.4 r-rlang@1.1.4 r-recipes@1.1.0 r-purrr@1.0.2 r-plotly@4.10.4 r-parsnip@1.2.1 r-modeltime@1.3.1 r-magrittr@2.0.3 r-lubridate@1.9.3 r-hardhat@1.4.0 r-ggplot2@3.5.1 r-forcats@1.0.0 r-dplyr@1.1.4 r-cowplot@1.1.3
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: https://www.spsanderson.com/healthyR.ts/
Licenses: Expat
Synopsis: The Time Series Modeling Companion to 'healthyR'
Description:

Hospital time series data analysis workflow tools, modeling, and automations. This library provides many useful tools to review common administrative time series hospital data. Some of these include average length of stay, and readmission rates. The aim is to provide a simple and consistent verb framework that takes the guesswork out of everything.

r-ie2miscdata 1.0.4
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://gitlab.com/iembry/ie2miscdata
Licenses: CC0
Synopsis: Irucka Embry's Miscellaneous USGS Data Collection
Description:

This package provides a collection of Irucka Embry's miscellaneous USGS data sets (USGS Parameter codes with fixed values, USGS global time zone codes, and US Air Force Global Engineering Weather Data). Irucka created these data sets while a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey (USGS) Contractor and/or USGS employee.

r-sensitivity 1.30.1
Propagated dependencies: r-rcpparmadillo@14.0.2-1 r-rcpp@1.0.13-1 r-numbers@0.8-5 r-ggplot2@3.5.1 r-foreach@1.5.2 r-dtwclust@6.0.0 r-boot@1.3-31
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sensitivity
Licenses: GPL 2
Synopsis: Global Sensitivity Analysis of Model Outputs and Importance Measures
Description:

This package provides a collection of functions for sensitivity analysis of model outputs (factor screening, global sensitivity analysis and robustness analysis), for variable importance measures of data, as well as for interpretability of machine learning models. Most of the functions have to be applied on scalar output, but several functions support multi-dimensional outputs.

r-tidytransit 1.7.0
Propagated dependencies: r-sf@1.0-19 r-rlang@1.1.4 r-jsonlite@1.8.9 r-hms@1.1.3 r-gtfsio@1.2.0 r-geodist@0.1.1 r-dplyr@1.1.4 r-digest@0.6.37 r-data-table@1.16.2
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/r-transit/tidytransit
Licenses: GPL 2+ GPL 3+
Synopsis: Read, Validate, Analyze, and Map GTFS Feeds
Description:

Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <https://gtfs.org/>.

r-ggtreespace 1.2.0
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.2.1 r-rlang@1.1.4 r-phytools@2.4-4 r-interp@1.1-6 r-ggtree@3.14.0 r-ggplot2@3.5.1 r-ggally@2.2.1 r-dplyr@1.1.4 r-ape@5.8
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: https://github.com/YuLab-SMU/ggtreeSpace
Licenses: Artistic License 2.0
Synopsis: Visualizing Phylomorphospaces using 'ggtree'
Description:

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

r-immunoclust 1.38.0
Dependencies: gsl@2.8
Propagated dependencies: r-lattice@0.22-6 r-flowcore@2.18.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/immunoClust
Licenses: Artistic License 2.0
Synopsis: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
Description:

immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.

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