The zlog package offers functions to transform laboratory measurements into standardised z or z(log)-values. Therefore the lower and upper reference limits are needed. If these are not known they could be estimated from a given sample.

Originally inspired by Unity IMGUI (immediate mode GUI API).

Designed as an auxiliary module for raylib to create simple GUI interfaces using raylib graphic style (simple colors, plain rectangular shapes, wide borders...) but it can be adapted to other engines/frameworks.

Rspamd is an advanced spam filtering system that allows evaluation of messages by a number of rules including regular expressions, statistical analysis and custom services such as URL black lists. Each message is analysed by Rspamd and given a spam score.

It implemented Age-Period-Interaction Model (APC-I Model) proposed in the paper of Liying Luo and James S. Hodges in 2019. A new age-period-cohort model for describing and investigating inter-cohort differences and life course dynamics.

This package provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM). See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.

Finds the best block diagonal matrix approximation of a symmetric matrix. This can be exploited for divisive hierarchical clustering using singular vectors, named HC-SVD. The method is described in Bauer (202Xa) <doi:10.48550/arXiv.2308.06820>.

Package for the analysis of categorical functional data. The main purpose is to compute an encoding (real functional variable) for each state <doi:10.3390/math9233074>. It also provides functions to perform basic statistical analysis on categorical functional data.

Calculates pointwise confidence intervals for the cumulative distribution function of the event time for current status data, data where each individual is assessed at one time to see if they had the event or not by the assessment time.

Use leaf physiognomic methods to reconstruct mean annual temperature (MAT), mean annual precipitation (MAP), and leaf dry mass per area (Ma), along with other useful quantitative leaf traits. Methods in this package described in Lowe et al. (in review).

This package contains functions for the DivE estimator <doi:10.1371/journal.pcbi.1003646>. The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.

This package provides a set of tools for empirical analysis of diversity (a number and frequency of different types in a population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.

Using an approach based on similarity graph to estimate change-point(s) and the corresponding p-values. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available.

Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.

Hypergeometric Intersection distributions are a broad group of distributions that describe the probability of picking intersections when drawing independently from two (or more) urns containing variable numbers of balls belonging to the same n categories. <arXiv:1305.0717>.

Reads the output of the PerkinElmer InForm software <http://www.perkinelmer.com/product/inform-cell-analysis-one-seat-cls135781>. In addition to cell-density count, it can derive statistics of intercellular spatial distance for each cell-type.

Fit joint mean-covariance models for longitudinal data. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the Armadillo C++ library for numerical linear algebra and RcppArmadillo glue.

This package provides a mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book. See Ekstrøm, C. T. (2016). The R Primer. 2nd edition. Chapman & Hall.

Multi-omic (or any multi-view) spectral clustering methods often assume the same number of clusters across all datasets. We supply methods for multi-omic spectral clustering when the number of distinct clusters differs among the omics profiles (views).

This package provides methods for controlling the median of the false discovery proportion (mFDP). Depending on the method, simultaneous or non-simultaneous inference is provided. The methods take a vector of p-values or test statistics as input.

Matrix-Based Flexible Project Planning. This package models, plans, and schedules flexible, such as agile, extreme, and hybrid project plans. The package contains project planning, scheduling, and risk assessment functions. Kosztyan (2022) <doi:10.1016/j.softx.2022.100973>.

Calculate POTH for treatment hierarchies from frequentist and Bayesian network meta-analysis. POTH quantifies the certainty in a treatment hierarchy. Subset POTH, POTH residuals, and best k treatments POTH can also be calculated to improve interpretation of treatment hierarchies.

Simple implementation of Semantic Versioning 2.0.0 ('SemVer') on the vctrs package. This package provides a simple way to create, compare, and manipulate semantic versions in R. It is designed to be lightweight and easy to use.

This package provides a non convex optimization package that optimizes any function under the criterion, combination of variables are on the surface of a unit sphere, as described in the paper : Das et al. (2019) <arXiv:1909.04024> .

Implement the algorithm provided in scan for estimating the transmission route on railway network using passenger volume. It is a generalization of the scan statistic approach for railway network to identify the hot railway route for transmitting infectious diseases.