This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_laevis\_2\_probe\_tab.

Enables the diagnostics and enhancement of regression model calibration.It offers both global and local visualization tools for calibration diagnostics and provides one recalibration method: Torres R, Nott DJ, Sisson SA, Rodrigues T, Reis JG, Rodrigues GS (2024) <doi:10.48550/arXiv.2403.05756>. The method leverages on Probabilistic Integral Transform (PIT) values to both evaluate and perform the calibration of statistical models. For a more detailed description of the package, please refer to the bachelor's thesis available bellow.

Calculating predictive model performance measures adjusted for predictor distributions using density ratio method (Sugiyama et al., (2012, ISBN:9781139035613)). L1 and L2 error for continuous outcome and C-statistics for binomial outcome are computed.

Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage.

Finds the URL to the favicon for a website. This is useful if you want to display the favicon in an HTML document or web application, especially if the website is behind a firewall.

Implementation of the ordinary functional kriging method proposed by Giraldo (2011) <doi:10.1007/s10651-010-0143-y>. This implements an alternative method to estimate the trace-variogram using Fourier Smoothing and Gaussian Quadrature.

Shiny Application to visualize Olympic Data. From 1896 to 2016. Even Winter Olympics events are included. Data is from Kaggle at <https://www.kaggle.com/heesoo37/120-years-of-olympic-history-athletes-and-results>.

This package provides functions for constructing dashboards for business process monitoring. Building on the event log objects class from package bupaR'. Allows the use to assemble custom shiny dashboards based on process data.

Generation of multiple count, binary, ordinal and normal variables simultaneously given the marginal characteristics and association structure. The details of the method are explained in Demirtas et al. (2012) <DOI:10.1002/sim.5362>.

Authentication helpers for Snowflake'. It provides compatibility with authentication approaches supported by the Snowflake Connector for Python <https://pypi.org/project/snowflake-connector-python> and the Snowflake CLI <https://pypi.org/project/snowflake-cli>.

Several functions and S3 methods to predict survival by using neural networks. We implemented Partial Logistic Artificial Neural Networks (PLANN) as proposed by Biganzoli et al. (1998) <https://pubmed.ncbi.nlm.nih.gov/9618776>.

This package provides functions to generate stop-word lists in 110 languages, in a way consistent across all the languages supported. The generated lists are based on the morphological tagset from the Universal Dependencies.

Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns.

This package provides datasets in a format that can be easily consumed by torch dataloaders'. Handles data downloading from multiple sources, caching and pre-processing so users can focus only on their model implementations.

The package provides utility functions related to package development. These include functions that replace slots, and selectors for show methods. It aims to coalesce the various helper functions often re-used throughout the Bioconductor ecosystem.

Date::Range is a library to work with date ranges. It can be used to determine whether a given date is in a particular range, or what the overlap between two ranges are.

Lumberjack is a simple logging utility that can be a drop in replacement for Logger or ActiveSupport::BufferedLogger. It provides support for automatically rolling log files even with multiple processes writing the same log file.

Cool-retro-term (crt) is a terminal emulator which mimics the look and feel of the old cathode ray tube (CRT) screens. It has been designed to be eye-candy, customizable, and reasonably lightweight.

Enables Retrieval-Augmented Generation (RAG) workflows in R by combining local vector search using DuckDB with optional web search via the Tavily API. Supports OpenAI'- and Ollama'-compatible embedding models, full-text and HNSW (Hierarchical Navigable Small World) indexing, and modular large language model (LLM) invocation. Designed for advanced question-answering, chat-based applications, and production-ready AI pipelines. This package is the R equivalent of the python package RAGFlowChain available at <https://pypi.org/project/RAGFlowChain/>.

This package provides a client for AWS Translate <https://aws.amazon.com/documentation/translate>, a machine translation service that will convert a text input in one language into a text output in another language.

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

This package provides a cascade select widget for usage in Shiny applications. This is useful for selection of hierarchical choices (e.g. continent, country, city). It is taken from the JavaScript library PrimeReact'.

This package provides different datasets parsed from Drugbank <https://www.drugbank.ca/covid-19> database using dbparser package. It is a smaller version from dbdataset package. It contains only information about COVID-19 possible treatment.

Analyses EuFMDiS output files in a Shiny App. The distributions of relevant output parameters are described in form of tables (quantiles) and plots. The App is called using eufmdis.adapt::run_adapt().