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r-steppedwedge 1.0.0
Propagated dependencies: r-stringr@1.5.1 r-performance@0.14.0 r-magrittr@2.0.3 r-lme4@1.1-37 r-ggplot2@3.5.2 r-geepack@1.3.12 r-forcats@1.0.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://avi-kenny.github.io/steppedwedge/
Licenses: GPL 3
Synopsis: Analyze Data from Stepped Wedge Cluster Randomized Trials
Description:

Provide various functions and tools to help fit models for estimating treatment effects in stepped wedge cluster randomized trials. Implements methods described in Kenny, Voldal, Xia, and Heagerty (2022) "Analysis of stepped wedge cluster randomized trials in the presence of a time-varying treatment effect", <doi:10.1002/sim.9511>.

r-tidytuesdayr 1.2.1
Propagated dependencies: r-xml2@1.3.8 r-tidyr@1.3.1 r-rvest@1.0.4 r-rlang@1.1.6 r-readr@2.1.5 r-purrr@1.0.4 r-magrittr@2.0.3 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-glue@1.8.0 r-gh@1.5.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://dslc-io.github.io/tidytuesdayR/
Licenses: Expat
Synopsis: Access the Weekly 'TidyTuesday' Project Dataset
Description:

TidyTuesday is a project by the Data Science Learning Community in which they post a weekly dataset in a public data repository (<https://github.com/rfordatascience/tidytuesday>) for people to analyze and visualize. This package provides the tools to easily download this data and the description of the source.

r-alabaster-se 1.8.0
Propagated dependencies: r-alabaster-base@1.8.0 r-alabaster-matrix@1.8.0 r-alabaster-ranges@1.8.0 r-biocgenerics@0.54.0 r-genomicranges@1.60.0 r-iranges@2.42.0 r-jsonlite@2.0.0 r-s4vectors@0.46.0 r-summarizedexperiment@1.38.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/alabaster.se
Licenses: Expat
Synopsis: Load and save SummarizedExperiments from file
Description:

This is a package for saving SummarizedExperiments into file artifacts, and loading them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

r-dropletutils 1.28.0
Propagated dependencies: r-beachmat@2.24.0 r-bh@1.87.0-1 r-biocgenerics@0.54.0 r-biocparallel@1.42.0 r-delayedarray@0.34.1 r-delayedmatrixstats@1.30.0 r-dqrng@0.4.1 r-edger@4.6.2 r-genomicranges@1.60.0 r-hdf5array@1.36.0 r-iranges@2.42.0 r-matrix@1.7-3 r-r-utils@2.13.0 r-rcpp@1.0.14 r-rhdf5@2.52.0 r-rhdf5lib@1.30.0 r-s4vectors@0.46.0 r-scuttle@1.18.0 r-singlecellexperiment@1.30.1 r-sparsearray@1.8.0 r-summarizedexperiment@1.38.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/DropletUtils
Licenses: GPL 3
Synopsis: Utilities for handling single-cell droplet data
Description:

This package provides a number of utility functions for handling single-cell RNA-seq data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

r-multidataset 1.36.0
Propagated dependencies: r-biobase@2.68.0 r-biocgenerics@0.54.0 r-genomicranges@1.60.0 r-ggplot2@3.5.2 r-ggrepel@0.9.6 r-iranges@2.42.0 r-limma@3.64.1 r-qqman@0.1.9 r-s4vectors@0.46.0 r-summarizedexperiment@1.38.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/MultiDataSet/
Licenses: Expat
Synopsis: Implementation of MultiDataSet and ResultSet
Description:

This package provides an implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

rust-str-stack 0.1.0
Channel: guix
Location: gnu/packages/crates-io.scm (gnu packages crates-io)
Home page: https://github.com/Stebalien/str_stack
Licenses: Expat ASL 2.0
Synopsis: String allocator for allocating many write-once strings
Description:

This package provides a string allocator for allocating many write-once strings. This library is primarily useful for parsing where you need to repeatedly build many strings, use them, and then throw them away. Instead of allocating many independent strings, this library will put them all in the same buffer.

r-arrangements 1.1.9
Dependencies: gmp@6.3.0
Propagated dependencies: r-r6@2.6.1 r-gmp@0.7-5
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/randy3k/arrangements
Licenses: Expat
Synopsis: Fast Generators and Iterators for Permutations, Combinations, Integer Partitions and Compositions
Description:

Fast generators and iterators for permutations, combinations, integer partitions and compositions. The arrangements are in lexicographical order and generated iteratively in a memory efficient manner. It has been demonstrated that arrangements outperforms most existing packages of similar kind. Benchmarks could be found at <https://randy3k.github.io/arrangements/articles/benchmark.html>.

r-causalcmprsk 2.0.0
Propagated dependencies: r-survival@3.8-3 r-purrr@1.0.4 r-inline@0.3.21 r-foreach@1.5.2 r-doparallel@1.0.17 r-data-table@1.17.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Bella2001/causalCmprsk
Licenses: GPL 2+
Synopsis: Nonparametric and Cox-Based Estimation of Average Treatment Effects in Competing Risks
Description:

Estimation of average treatment effects (ATE) of point interventions on time-to-event outcomes with K competing risks (K can be 1). The method uses propensity scores and inverse probability weighting for emulation of baseline randomization, which is described in Charpignon et al. (2022) <doi:10.1038/s41467-022-35157-w>.

r-covid19india 0.1.4
Propagated dependencies: r-stringr@1.5.1 r-scales@1.4.0 r-magrittr@2.0.3 r-janitor@2.2.1 r-httr@1.4.7 r-gt@1.0.0 r-glue@1.8.0 r-epiestim@2.2-5 r-data-table@1.17.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/maxsal/covid19india
Licenses: Expat
Synopsis: Pulling Clean Data from Covid19india.org
Description:

Pull raw and pre-cleaned versions of national and state-level COVID-19 time-series data from covid19india.org <https://www.covid19india.org>. Easily obtain and merge case count data, testing data, and vaccine data. Also assists in calculating the time-varying effective reproduction number with sensible parameters for COVID-19.

r-inferference 1.0.3
Propagated dependencies: r-spamm@4.5.0 r-numderiv@2016.8-1.1 r-lme4@1.1-37 r-formula@1.2-5
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://cran.r-project.org/package=inferference
Licenses: GPL 2+
Synopsis: Methods for Causal Inference with Interference
Description:

This package provides methods for estimating causal effects in the presence of interference described in B. Saul and M. Hugdens (2017) <doi:10.18637/jss.v082.i02>. Currently it implements the inverse-probability weighted (IPW) estimators proposed by E.J. Tchetgen Tchetgen and T.J. Vanderweele (2012) <doi:10.1177/0962280210386779>.

r-multiwayvcov 1.2.3
Propagated dependencies: r-sandwich@3.1-1 r-boot@1.3-31
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: http://sites.google.com/site/npgraham1/research/code
Licenses: FreeBSD
Synopsis: Multi-Way Standard Error Clustering
Description:

Exports two functions implementing multi-way clustering using the method suggested by Cameron, Gelbach, & Miller (2011) and cluster (or block) bootstrapping for estimating variance-covariance matrices. Normal one and two-way clustering matches the results of other common statistical packages. Missing values are handled transparently and rudimentary parallelization support is provided.

r-mergedblocks 1.1.1
Propagated dependencies: r-randomizer@3.0.2
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=mergedblocks
Licenses: GPL 3
Synopsis: Merged Block Randomization
Description:

Package to carry out merged block randomization (Van der Pas (2019), <doi:10.1177/1740774519827957>), a restricted randomization method designed for small clinical trials (at most 100 subjects) or trials with small strata, for example in multicentre trials. It can be used for more than two groups or unequal randomization ratios.

r-tidyestimate 1.1.1
Propagated dependencies: r-rlang@1.1.6 r-glue@1.8.0 r-ggrepel@0.9.6 r-ggplot2@3.5.2 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/KaiAragaki/tidyestimate
Licenses: GPL 2+
Synopsis: Tidy Implementation of 'ESTIMATE'
Description:

The ESTIMATE package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. tidyestimate a fast, tidy, modern reimagination of ESTIMATE (2013) <doi:10.1038/ncomms3612>.

r-wavscalogram 1.1.3
Propagated dependencies: r-fields@16.3.1 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/w.scm (guix-cran packages w)
Home page: https://cran.r-project.org/package=wavScalogram
Licenses: GPL 2+ GPL 3+
Synopsis: Wavelet Scalogram Tools for Time Series Analysis
Description:

This package provides scalogram based wavelet tools for time series analysis: wavelet power spectrum, scalogram, windowed scalogram, windowed scalogram difference (see Bolos et al. (2017) <doi:10.1016/j.amc.2017.05.046>), scale index and windowed scale index (Benitez et al. (2010) <doi:10.1016/j.camwa.2010.05.010>).

r-rvinecopulib 0.7.3.1.0
Propagated dependencies: r-wdm@0.2.6 r-rcppthread@2.2.0 r-rcppeigen@0.3.4.0.2 r-rcpp@1.0.14 r-lattice@0.22-7 r-kde1d@1.1.1 r-bh@1.87.0-1 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://vinecopulib.github.io/rvinecopulib/
Licenses: GPL 3 FSDG-compatible
Synopsis: High Performance Algorithms for Vine Copula Modeling
Description:

This package provides an interface to vinecopulib', a C++ library for vine copula modeling. The rvinecopulib package implements the core features of the popular VineCopula package, in particular inference algorithms for both vine copula and bivariate copula models. Advantages over VineCopula are a sleeker and more modern API, improved performances, especially in high dimensions, nonparametric and multi-parameter families, and the ability to model discrete variables. The rvinecopulib package includes vinecopulib as header-only C++ library (currently version 0.7.2). Thus users do not need to install vinecopulib itself in order to use rvinecopulib'. Since their initial releases, vinecopulib is licensed under the MIT License, and rvinecopulib is licensed under the GNU GPL version 3.

emacs-org-roam 2.2.2-7.5c06471
Dependencies: graphviz@7.0.1
Propagated dependencies: emacs-dash@2.20.0 emacs-emacsql@4.3.0 emacs-f@0.21.0 emacs-magit@4.3.6
Channel: rrr
Location: rrr/packages/emacs-xyz.scm (rrr packages emacs-xyz)
Home page: https://github.com/org-roam/org-roam/
Licenses: GPL 3+
Synopsis: Non-hierarchical note-taking with Org mode
Description:

Emacs Org Roam is a solution for taking non-hierarchical notes with Org mode. Notes are captured without hierarchy and are connected by tags. Notes can be found and created quickly. Org Roam should also work as a plug-and-play solution for anyone already using Org mode for their personal wiki.

r-correctedfdr 1.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CorrectedFDR
Licenses: LGPL 3
Synopsis: Correcting False Discovery Rates
Description:

There are many estimators of false discovery rate. In this package we compute the Nonlocal False Discovery Rate (NFDR) and the estimators of local false discovery rate: Corrected False discovery Rate (CFDR), Re-ranked False Discovery rate (RFDR) and the blended estimator. Bickel, D.R., Rahal, A. (2019) <https://tinyurl.com/kkdc9rk8>.

r-cinterpolate 1.0.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/mrc-ide/cinterpolate
Licenses: Expat
Synopsis: Interpolation From C
Description:

Simple interpolation methods designed to be used from C code. Supports constant, linear and spline interpolation. An R wrapper is included but this package is primarily designed to be used from C code using LinkingTo'. The spline calculations are classical cubic interpolation, e.g., Forsythe, Malcolm and Moler (1977) <ISBN: 9780131653320>.

r-circlizeplus 0.9.1
Propagated dependencies: r-circlize@0.4.16
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/TianzeLab/circlizePlus
Licenses: Expat
Synopsis: Using 'ggplot2' Feature to Write Readable R Code for Circular Visualization
Description:

This package provides a wrapper for circlize'. All components are based on classes and objects. Users can use the addition symbol (+) to combine components for a circular visualization with ggplot2 style.The package is described in Zhang Z, Cao T, Huang Y and Xia Y (2025) <doi:10.3389/fgene.2025.1535368>.

r-nhsrdatasets 0.3.0
Propagated dependencies: r-tibble@3.2.1
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/nhs-r-community/NHSRdatasets
Licenses: CC0
Synopsis: NHS and Healthcare-Related Data for Education and Training
Description:

Free United Kingdom National Health Service (NHS) and other healthcare, or population health-related data for education and training purposes. This package contains synthetic data based on real healthcare datasets, or cuts of open-licenced official data. This package exists to support skills development in the NHS-R community: <https://nhsrcommunity.com/>.

r-xlsform2word 0.1.0
Propagated dependencies: r-stringr@1.5.1 r-rlang@1.1.6 r-readxl@1.4.5 r-officer@0.6.10 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/x.scm (guix-cran packages x)
Home page: https://cran.r-project.org/package=xlsform2word
Licenses: Expat
Synopsis: Convert 'XLSForm' to Structured 'Word' Document
Description:

Converts an XLSForm (survey in Excel') into a well-structured Word document, including sections, skip logic, options, and question labels. Designed to support survey documentation, training materials, and data collection workflows. The package was developed based on field experience with XLSForm and humanitarian operations, aiming to streamline documentation and enhance training efficiency.

emacs-org-roam 2.3.0
Dependencies: graphviz@7.0.1
Propagated dependencies: emacs-dash@2.20.0 emacs-emacsql@4.3.0 emacs-magit@4.3.6
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/org-roam/org-roam/
Licenses: GPL 3+
Synopsis: Non-hierarchical note-taking with Org mode
Description:

Emacs Org Roam is a solution for taking non-hierarchical notes with Org mode. Notes are captured without hierarchy and are connected by tags. Notes can be found and created quickly. Org Roam should also work as a plug-and-play solution for anyone already using Org mode for their personal wiki.

python-pip-run 8.8.0
Propagated dependencies: python-autocommand@2.2.1 python-path@17.1.0 python-packaging@24.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/jaraco/pip-run
Licenses: Expat
Synopsis: Dynamic dependency loader for Python
Description:

The pip-run command provides on-demand temporary package installation for a single interpreter run. It replaces this series of commands:

$ virtualenv --python pythonX.X --system-site-packages /tmp/env
$ /tmp/env/bin/pip install pkg1 pkg2 -r reqs.txt
$ /tmp/env/bin/python ...
$ rm -rf /tmp/env
guile-json-rps 0.2.11-0.45ae689
Channel: rrr
Location: rrr/packages/guile-xyz.scm (rrr packages guile-xyz)
Home page: https://codeberg.org/rgherdt/scheme-json-rpc
Licenses: Expat
Synopsis: An implementation of the JSON-RPC for Scheme
Description:

scheme-json-rpc allows calling procedures on remote servers by exchanging JSON objects. It implements the https://www.jsonrpc.org/specification. The low-level API strives to be R7RS compliant, relying on some SRFI's when needed. So far it was only tested under CHICKEN 5 and Guile 3.

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