Model-based clustering for paired data based on the regression of a mixture of Bayesian hierarchical models on covariates. Zhang et al. (2023) <doi:10.1186/s12859-023-05556-x>.

Provide estimation and data generation tools for a generalization of the transmuted distributions discussed in Shaw and Buckley (2007). See <doi:10.48550/arXiv.0901.0434> for more information.

Evaluate bias and precision in method comparison studies. One provides measurements for each method and it takes care of the estimates. Multiple plots to evaluate bias, precision and compare methods.

It allows the user to determine sample sizes, select probabilistic samples, make estimates of different parameters for the total finite population and in studio domains, using the main design drawings.

An R wrapper for using TooManyCells', a command line program for clustering, visualizing, and quantifying cell clade relationships. See <https://gregoryschwartz.github.io/too-many-cells/> for more details.

This package provides Water Year Hydrologic Classification Indices based on measured unimpaired runoff (in million acre-feet). Data is provided by California Department of Water Resources and subject to revision.

This package contains the US Census Bureau's 2020 ZCTA to County Relationship File, as well as convenience functions to translate between States, Counties and ZIP Code Tabulation Areas (ZCTAs).

This package provides a common interface to multiple JSON libraries, including Oj, Yajl, the JSON gem (with C-extensions), the pure-Ruby JSON gem, NSJSONSerialization, gson.rb, JrJackson, and OkJson.

This tool can be used to build binary interval trees using real number inputs. The tree supports queries of intervals overlapping a single number or an interval (start, end). Intervals with same bounds but different names are treated as distinct intervals. Insertion of intervals is also allowed. Deletion of intervals is not implemented at this point. See Mark de Berg, Otfried Cheong, Marc van Kreveld, Mark Overmars (2008). Computational Geometry: Algorithms and Applications, for a reference.

Converting ascii text into (floating-point) numeric values is a very common problem. The fast_float header-only C++ library by Daniel Lemire does it very well and very fast at up to or over to 1 gigabyte per second as described in more detail in <doi:10.1002/spe.2984>. fast_float is licensed under the Apache 2.0 license and provided here for use by other R packages via a simple LinkingTo: statement.

The Axoloti patcher offers a “patcher” environment similar to Pure Data for sketching digital audio algorithms. The patches run on a standalone powerful microcontroller board: Axoloti Core. This package provides the runtime.

This package provides processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

This package provides an R Markdown format for converting an R Markdown document to a grid-oriented dashboard. The dashboard flexibly adapts the size of its components to the containing web page.

The basic command of the package is \relsize, whose argument is a number of \magsteps to change size; from this are defined commands \larger, \smaller, \textlarger, etc.

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Medicago\_probe\_tab.

Research of subgroups in random clinical trials with binary outcome and two treatments groups. This is an adaptation of the Jared Foster method (<https://www.ncbi.nlm.nih.gov/pubmed/21815180>).

Bayesian estimation of dynamic conditional correlation GARCH model for multivariate time series volatility (Fioruci, J.A., Ehlers, R.S. and Andrade-Filho, M.G., (2014). <doi:10.1080/02664763.2013.839635>.

Common API for filtering data stored in different data models. Provides multiple filter types and reproducible R code. Works standalone or with shinyCohortBuilder as the GUI for interactive Shiny apps.

Predict future values with hybrid combinations of Pattern Sequence based Forecasting (PSF), Autoregressive Integrated Moving Average (ARIMA), Empirical Mode Decomposition (EMD) and Ensemble Empirical Mode Decomposition (EEMD) methods based hybrid methods.

MatLab'-Style Modeling of Optimization Problems with R'. This package provides a set of convenience functions to transform a MatLab'-style optimization modeling structure to its ROI equivalent.

Implementation of a computationally efficient method for simulating queues with arbitrary arrival and service times. Please see Ebert, Wu, Mengersen & Ruggeri (2020, <doi:10.18637/jss.v095.i05>) for further details.

Enables the complete removal of various Shiny components, such as inputs, outputs and modules. It also aids in the removal of observers that have been created in dynamically created modules.

Presmoothed estimators of survival, density, cumulative and non-cumulative hazard functions with right-censored survival data. For details, see Lopez-de-Ullibarri and Jacome (2013) <doi:10.18637/jss.v054.i11>.