Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories.

Agilent Mouse annotation data (chip mgug4121a) assembled using data from public repositories.

This package provides pathways from the NCI Pathways Database as R graph objects.

This package provides QDNAseq bin annotations for the mouse genome build mm10.

This package provides QDNAseq bin annotations for the human genome build hg19.

Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.

This package provides a collection of different sets of experimental data from yeast.

This package provides a package containing an environment representing the Zebrafish.cdf file.

This package provides a collection of tools for the analysis of habitat selection.

This package provides a collection of tools for the analysis of animal movements.

Correcting area under ROC (AUC) for measurement error based on probit-shift model.

Flexible parametric mixture and non-mixture cure models for time-to-event data.

Estimates optimal number of biomarkers for two-group classification based on microarray data.

Computation of robust standard errors of Poisson fixed effects models, following Wooldridge (1999).

Ruby C bindings to the Yajl JSON stream-based parser library. The API is compatible with the JSON gem, so yajl-ruby can act as a drop in replacement.

A modified copy of yajl is used, and included in the package.

This package implements regression calibration methods for correcting measurement error in regression models using external or internal reliability studies. Methods are described in Carroll, Ruppert, Stefanski, and Crainiceanu (2006) "Measurement Error in Nonlinear Models: A Modern Perspective" <doi:10.1201/9781420010138>.

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

This package creates the radar-boxplot, a plot that was created by the author during his Ph.D. in forest resources. The radar-boxplot is a visualization feature suited for multivariate classification/clustering. It provides an intuitive deep understanding of the data.

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb as GRanges object.

This package implements an API for rewriting sources in an Elixir project powered by sourceror.

Guile-redis provides a Scheme interface to the Redis key-value cache and store.

ChIA-PET example datasets and additional data for use with the diffloop package.

This package provides a package containing an environment representing the Ecoli_ASv2.CDF file.

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.