Analysis of preprocessed dramatic texts, with respect to literary research. The package provides functions to analyze and visualize information about characters, stage directions, the dramatic structure and the text itself. The dramatic texts are expected to be in CSV format, which can be installed from within the package, sample texts are provided. The package and the reasoning behind it are described in Reiter et al. (2017) <doi:10.18420/in2017_119>.

Imports time series data from the Quandl database <https://data.nasdaq.com/>. The package uses the json api at <https://data.nasdaq.com/search>, local caching ('memoise package) and the tidy format by default. Also allows queries of databases, allowing the user to see which time series are available for each database id. In short, it is an alternative to package Quandl', with faster data importation in the tidy/long format.

This package provides tools to sort, edit and prune pedigrees and to extract the inbreeding coefficients and the relationship matrix (includes code for pedigrees from self-pollinated species). The use of pedigree data is central to genetics research within the animal and plant breeding communities to predict breeding values. The relationship matrix between the individuals can be derived from pedigree structure ('Vazquez et al., 2010') <doi:10.2527/jas.2009-1952>.

This package provides a range of functions for the design and analysis of disease surveillance activities. These functions were originally developed for animal health surveillance activities but can be equally applied to aquatic animal, wildlife, plant and human health surveillance activities. Utilities are included for sample size calculation and analysis of representative surveys for disease freedom, risk-based studies for disease freedom and for prevalence estimation. This package is based on Cameron A., Conraths F., Frohlich A., Schauer B., Schulz K., Sergeant E., Sonnenburg J., Staubach C. (2015). R package of functions for risk-based surveillance. Deliverable 6.24, WP 6 - Decision making tools for implementing risk-based surveillance, Grant Number no. 310806, RISKSUR (<https://www.fp7-risksur.eu/sites/default/files/documents/Deliverables/RISKSUR_%28310806%29_D6.24.pdf>). Many of the RSurveillance functions are incorporated into the epitools website: Sergeant, ESG, 2019. Epitools epidemiological calculators. Ausvet Pty Ltd. Available at: <http://epitools.ausvet.com.au>.

This Python module provides line editing functions similar to the default Emacs-style ones of GNU Readline. Unlike the Python standard library's readline package, this one allows access to those capabilities in settings outside of a standard command-line interface. It is especially well-suited to interfacing with Urwid, due to a shared syntax for describing key inputs.

Currently, all stateless Readline commands are implemented. Yanking and history are not supported.

With Serverspec, you can write RSpec tests for checking your servers are configured correctly.

Serverspec tests your servers’ actual state by executing command locally, via SSH, via WinRM, via Docker API and so on. So you don’t need to install any agent softwares on your servers and can use any configuration management tools, Puppet, Ansible, CFEngine, Itamae and so on.

But the true aim of Serverspec is to help refactoring infrastructure code.

Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126>, A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470> and Y. Tang et al (2023) <doi:10.48550/arXiv.2303.11561>. It was supported by DFG grants KI 1443/3-1 and KI 1443/3-2.

Analysis of large datasets of fixed coupon bonds, allowing for irregular first and last coupon periods and various day count conventions. With this package you can compute the yield to maturity, the modified and MacAulay durations and the convexity of fixed-rate bonds. It provides the function AnnivDates, which can be used to evaluate the quality of the data and return time-invariant properties and temporal structure of a bond.

This package implements likelihood-based evidence ratios for unified reporting in classical statistical testing. The package reports effect estimates, uncertainty intervals, and likelihood ratios on the log 10 scale derived from a single statistical model. It applies to standard normal mean tests, contingency tables, and regression coefficients, and provides a direct evidential measure while retaining classical error guarantees. For the Evidence Ratio Reporting Standard see Lawless (2026) <doi:10.5281/zenodo.18261076>.

Sparklines are small plots (about one line of text high), made popular by Edward Tufte. This package is the interface from R to the LaTeX package sparklines by Andreas Loeffer and Dan Luecking (<http://www.ctan.org/pkg/sparklines>). It can work with Sweave or knitr or other engines that produce TeX. The package can be used to plot vectors, matrices, data frames, time series (in ts or zoo format).

This package provides a comprehensive and curated collection of datasets related to the lungs, respiratory system, and associated diseases. This package includes epidemiological, clinical, experimental, and simulated datasets on conditions such as lung cancer, asthma, Chronic Obstructive Pulmonary Disease (COPD), tuberculosis, whooping cough, pneumonia, influenza, and other respiratory illnesses. It is designed to support data exploration, statistical modeling, teaching, and research in pulmonary medicine, public health, environmental epidemiology, and respiratory disease surveillance.

We implement functions to estimate and perform sensitivity analysis to unobserved confounding of direct and indirect effects introduced in Lindmark, de Luna and Eriksson (2018) <doi:10.1002/sim.7620> and Lindmark (2022) <doi:10.1007/s10260-021-00611-4>. The estimation and sensitivity analysis are parametric, based on probit and/or linear regression models. Sensitivity analysis is implemented for unobserved confounding of the exposure-mediator, mediator-outcome and exposure-outcome relationships.

planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.

Catalogues of resolution IV regular fractional factorial designs in 128 runs are provided for up to 33 2-level factors. The catalogues are complete, excluding resolution IV designs without 5-letter words, because these do not add value for a search for unblocked clear designs. The previous package version 1.0 with complete catalogues up to 24 runs (24 runs and a namespace added later) can be downloaded from the authors website.

Access to several Numerical Weather Prediction services both in raster format and as a time series for a location. Currently it works with GFS <https://www.ncei.noaa.gov/products/weather-climate-models/global-forecast>, MeteoGalicia <https://www.meteogalicia.gal/web/modelos/threddsIndex.action>, NAM <https://www.ncei.noaa.gov/products/weather-climate-models/north-american-mesoscale>, and RAP <https://www.ncei.noaa.gov/products/weather-climate-models/rapid-refresh-update>.

The goal of statcodelists is to promote the reuse and exchange of statistical information and related metadata with making the internationally standardized SDMX code lists available for the R user. SDMX has been published as an ISO International Standard (ISO 17369). The metadata definitions, including the codelists are updated regularly according to the standard. The authoritative version of the code lists made available in this package is <https://sdmx.org/?page_id=3215/>.

The computation of a seasonal index is a fundamental step in time-series forecasting when the data exhibits seasonality. Specifically, a seasonal index quantifies â for each season (e.g. month, quarter, week) â the relative magnitude of the seasonal effect compared to the overall average level of the series. This package has been developed to compute seasonal index for time series data and it also seasonalise and desesaonalise the time series data.

Uses a novel rank-based nonparametric approach to evaluate a surrogate marker in a small sample size setting. Details are described in Parast et al (2024) <doi:10.1093/biomtc/ujad035> and Hughes A et al (2025) <doi:10.1002/sim.70241>. A tutorial for this package can be found at <https://www.laylaparast.com/surrogaterank> and a Shiny App implementing the package can be found at <https://parastlab.shinyapps.io/SurrogateRankApp/>.

ruptures is a Python library for off-line change point detection. This package provides methods for the analysis and segmentation of non-stationary signals. Implemented algorithms include exact and approximate detection for various parametric and non-parametric models. ruptures focuses on ease of use by providing a well-documented and consistent interface. In addition, thanks to its modular structure, different algorithms and models can be connected and extended within this package.

This package implements an innovative approach to community detection in social networks using Association Rules Learning. The package provides tools for processing graph and rules objects, generating association rules, and detecting communities based on node interactions. Designed to facilitate advanced research in Social Network Analysis, this package leverages association rules learning for enhanced community detection. This approach is described in El-Moussaoui et al. (2021) <doi:10.1007/978-3-030-66840-2_3>.

Loads and displays images, selectively masks specified background colors, bins pixels by color using either data-dependent or automatically generated color bins, quantitatively measures color similarity among images using one of several distance metrics for comparing pixel color clusters, and clusters images by object color similarity. Uses CIELAB, RGB, or HSV color spaces. Originally written for use with organism coloration (reef fish color diversity, butterfly mimicry, etc), but easily applicable for any image set.

The user can directly compute and display false discovery rates from inputted p-values or z-scores under a variety of assumptions. p.fdr() computes FDRs, adjusted p-values and decision reject vectors from inputted p-values or z-values. get.pi0() estimates the proportion of data that are truly null. plot.p.fdr() plots the FDRs, adjusted p-values, and the raw p-values points against their rejection threshold lines.

This package provides functions for testing randomness for a univariate time series with arbitrary distribution (discrete, continuous, mixture of both types) and for testing independence between random variables with arbitrary distributions. The test statistics are based on the multilinear empirical copula and multipliers are used to compute P-values. The test of independence between random variables appeared in Genest, Nešlehová, Rémillard & Murphy (2019) and the test of randomness appeared in Nasri (2022).

Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) <http://www.sequenceontology.org/>, Mutation Annotation Format (MAF) <https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/> or Prediction and Annotation of Variant Effects (PAVE) <https://github.com/hartwigmedical/hmftools/tree/master/pave>. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.