This package provides model-robust standard error estimators for cross-sectional, time series, clustered, panel, and longitudinal data.

This package provides selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.

This package provides an easy way to fill an environment with active bindings that call a C++ function.

This package provides a toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models.

This package creates alluvial diagrams (also known as parallel sets plots) for multivariate and time series-like data.

RcppDist provides a header-only C++ library with functions for additional statistical distributions that can be called from C++ when writing code using Rcpp or RcppArmadillo. Functions are available that return a NumericVector as well as doubles, and for multivariate or matrix distributions, Armadillo vectors and matrices.

This package provides a wrapper for the Intro.js library. This package makes it easy to include step-by-step introductions, and clickable hints in a Shiny application. It supports both static introductions in the UI, and programmatic introductions from the server-side.

This package implements the mini-batch k-means algorithm for large datasets, including support for on-disk data representation.

This package provides basic routines for estimation of gene-specific transcriptional derivatives and visualization of the resulting velocity patterns.

This package provides an environment for teaching "Financial Engineering and Computational Finance" and for managing chronological and calendar objects.

This package provides tools for fitting linear models and generalized linear models to large data sets by updating algorithms.

Rail is a nREPL client based on monroe with similar features, but aims to be a more complete implementation.

This package provides a unit testing system for R designed to be fun, flexible and easy to set up.

rss-bridge generates Atom feeds for social networking websites lacking feeds. Supported websites include Facebook, Twitter, Instagram and YouTube.

This package provides tools for alignment, quantification and analysis of second and third generation sequencing data. It includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. It can be applied to all major sequencing techologies and to both short and long sequence reads.

This package provides an R interface to the Spectra library for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n.

raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.

This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations.

This package is designed to facilitate the automated gating methods in a sequential way to mimic the manual gating strategy.

This package provides a package that makes it easy to implement sankey, alluvial and sankey bump plots in ggplot2.

This R tool infers, visualizes, and analyzes cell-cell communication networks. It supports scRNA-seq and spatially resolved transcriptomics data.

This package provides an R library to generate Sankey network graphs in R and Shiny via the D3 visualization library.

This package fits multivariate generalized linear mixed models and related models. This is done using Markov chain Monte Carlo techniques.

This package provides beanplots, an alternative to boxplot/stripchart/violin plots. It can be used to plot univariate comparison graphs.