Quality of care is compared across accountable entities, including hospitals, provider groups, and insurance plans, using standardized quality measures. However, observed variations in quality measure performance might be the result of chance sampling or measurement errors. Contains functions for estimating the reliability of unadjusted and risk-standardized quality measures.

This package provides functions to parse and analyze logs generated by ShinyProxy containers. It extracts metadata from log file names, reads log contents, and computes summary statistics (such as the total number of lines and lines containing error messages), facilitating efficient monitoring and debugging of ShinyProxy deployments.

Pacote para a analise de experimentos com um ou dois fatores com testemunhas adicionais conduzidos no delineamento inteiramente casualizado ou em blocos casualizados. "Package for the analysis of one or two-way experiments with additional controls conducted in a completely randomized design or in a randomized block design".

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

This package provides a developer-facing interface to the Arrow Database Connectivity ('ADBC') PostgreSQL driver for the purposes of building high-level database interfaces for users. ADBC <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses Arrow for result sets and query parameters.

Statistical analysis of axial using distributions Nonnegative Trigonometric Sums (NNTS). The package includes functions for calculation of densities and distributions, for the estimation of parameters, and more. Fernandez-Duran, J.J. and Gregorio-Dominguez, M.M. (2025), Multimodal distributions for circular axial data", <doi:10.48550/arXiv.2504.04681>.

The population proportion using group testing can be estimated by different methods. Four functions including p.mle(), p.gart(), p.burrow() and p.order() are provided to implement four estimating methods including the maximum likelihood estimate, Gart's estimate, Burrow's estimate, and order statistic estimate.

This package provides a suite of statistical methods for analysis of single-cell omics data including linear model-based methods for differential abundance analysis for individual level single-cell RNA-seq data. For more details see Zhang, et al. (Submitted to Bioinformatics)<https://github.com/Lujun995/DiSC_Replication_Code>.

This package provides utilities for processing and analyzing the files that are exported from a recorded Zoom meeting. This includes analyzing data captured through video cameras and microphones, the text-based chat, and meta-data. You can analyze aspects of the conversation among meeting participants and their emotional expressions throughout the meeting.

Syntax Tree is a suite of tools built on top of the internal CRuby parser. It provides the ability to generate a syntax tree from source, as well as the tools necessary to inspect and manipulate that syntax tree. It can be used to build formatters, linters, language servers, and more.

This package provides a package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Allows for the specification of semi-structured deep distributional regression models which are fitted in a neural network as proposed by Ruegamer et al. (2023) <doi:10.18637/jss.v105.i02>. Predictors can be modeled using structured (penalized) linear effects, structured non-linear effects or using an unstructured deep network model.

Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornsteinâ Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

This package provides a collection of sample datasets on various fields such as automotive performance and safety data to historical demographics and socioeconomic indicators, as well as recreational data. It serves as a resource for researchers and analysts seeking to perform analyses and derive insights from classic data sets in R.

Create beautifully color-coordinated and customized themes for your xaringan slides, without writing any CSS. Complete your slide theme with ggplot2 themes that match the font and colors used in your slides. Customized styles can be created directly in your slides R Markdown source file or in a separate external script.

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. It also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Distributional instrumental variable (DIV) model for estimation of the interventional distribution of the outcome Y under a do intervention on the treatment X. Instruments, predictors and targets can be univariate or multivariate. Functionality includes estimation of the (conditional) interventional mean and quantiles, as well as sampling from the fitted (conditional) interventional distribution.

An easy tool to transform 2D longitudinal data into 3D arrays suitable for Long short-term memory neural networks training. The array output can be used by the keras package. Long short-term memory neural networks are described in: Hochreiter, S., & Schmidhuber, J. (1997) <doi:10.1162/neco.1997.9.8.1735>.

The d3.js framework with the plugins d3-voronoi-map, d3-voronoi-treemap and d3-weighted-voronoi are used to generate Voronoi treemaps in R and in a shiny application. The computation of the Voronoi treemaps are based on Nocaj and Brandes (2012) <doi:10.1111/j.1467-8659.2012.03078.x>.

The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.

This is a package for saving Bioconductor data structures into file artifacts, and loading them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Text::Hyphen is a Ruby library to hyphenate words in various languages using Ruby-fied versions of TeX hyphenation patterns. It will properly hyphenate various words according to the rules of the language the word is written in. The algorithm is based on that of the TeX typesetting system by Donald E. Knuth.

This package provides a streamlined and user-friendly framework for bootstrapping in state space models, particularly when the number of subjects/units (n) exceeds one, a scenario commonly encountered in social and behavioral sciences. The parametric bootstrap implemented here was developed and applied in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.

For a given Sentence-Aligned Parallel Corpus, it aligns words for each sentence pair. It considers one-to-many and symmetrization alignments. Moreover, it evaluates the quality of word alignment based on this package and some other software. It also builds an automatic dictionary of two languages based on given parallel corpus.