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u-boot-rpi-2-efi 2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a 32-bit build of U-Boot.

r-algebraic-dist 0.1.0
Propagated dependencies: r-r6@2.6.1 r-mvtnorm@1.3-3
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/queelius/algebraic.dist
Licenses: GPL 3+
Synopsis: Algebra over Probability Distributions
Description:

This package provides an algebra over probability distributions enabling composition, sampling, and automatic simplification to closed forms. Supports normal, exponential, multivariate normal, and empirical distributions with operations like addition and subtraction that automatically simplify when mathematical identities apply (e.g., the sum of independent normal distributions is normal). Uses S3 classes for distributions and R6 for support objects.

r-distributions3 0.2.3
Propagated dependencies: r-rlang@1.1.6 r-glue@1.8.0 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://github.com/alexpghayes/distributions3
Licenses: Expat
Synopsis: Probability Distributions as S3 Objects
Description:

This package provides tools to create and manipulate probability distributions using S3. Generics pdf(), cdf(), quantile(), and random() provide replacements for base R's d/p/q/r style functions. Functions and arguments have been named carefully to minimize confusion for students in intro stats courses. The documentation for each distribution contains detailed mathematical notes.

r-interactionrcs 0.1.2
Propagated dependencies: r-survival@3.8-3 r-stringr@1.6.0 r-rms@8.1-0 r-rlang@1.1.6 r-pspline@1.0-21 r-msm@1.8.2 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://cran.r-project.org/package=interactionRCS
Licenses: GPL 3
Synopsis: Calculate Estimates in Models with Interaction
Description:

This package provides a tool to calculate and plot estimates from models in which an interaction between the main predictor and a continuous covariate has been specified. Methods used in the package refer to Harrell Jr FE (2015, ISBN:9783319330396); Durrleman S, Simon R. (1989) <doi:10.1002/sim.4780080504>; Greenland S. (1995) <doi:10.1097/00001648-199507000-00005>.

r-ljmp3converter 1.0.7
Propagated dependencies: r-rstudioapi@0.17.1 r-httr@1.4.7 r-fs@1.6.6
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LJmp3converter
Licenses: GPL 3
Synopsis: Convert Video Files to 'mp3' Format, Merge or Trim Audio Files using 'FFmpeg'
Description:

Converts video files to mp3', merges multiple audio files and trims audio files using FFmpeg', which is dynamically downloaded to avoid bundling any third-party binaries. Users must ensure compliance with the license terms of FFmpeg when using the package. See <https://github.com/BtbN/FFmpeg-Builds/releases/download/latest/ffmpeg-master-latest-win64-gpl.zip> for details.

r-polysegratiomm 0.6-4
Propagated dependencies: r-polysegratio@0.2-5 r-lattice@0.22-7 r-gtools@3.9.5 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/petebaker/polysegratiomm
Licenses: GPL 3
Synopsis: Bayesian Mixture Models for Marker Dosage in Autopolyploids
Description:

Fits Bayesian mixture models to estimate marker dosage for dominant markers in autopolyploids using JAGS (1.0 or greater) as outlined in Baker et al "Bayesian estimation of marker dosage in sugarcane and other autopolyploids" (2010, <doi:10.1007/s00122-010-1283-z>). May be used in conjunction with polySegratio for simulation studies and comparison with standard methods.

r-trialemulation 0.0.4.8
Propagated dependencies: r-sandwich@3.1-1 r-rcpp@1.1.0 r-parglm@0.1.7 r-mvtnorm@1.3-3 r-lmtest@0.9-40 r-lifecycle@1.0.4 r-formula-tools@1.7.1 r-duckdb@1.4.2 r-dbi@1.2.3 r-data-table@1.17.8 r-checkmate@2.3.3 r-broom@1.0.10
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://causal-lda.github.io/TrialEmulation/
Licenses: FSDG-compatible
Synopsis: Causal Analysis of Observational Time-to-Event Data
Description:

This package implements target trial emulation methods to apply randomized clinical trial design and analysis in an observational setting. Using marginal structural models, it can estimate intention-to-treat and per-protocol effects in emulated trials using electronic health records. A description and application of the method can be found in Danaei et al (2013) <doi:10.1177/0962280211403603>.

r-bayesknockdown 1.36.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/BayesKnockdown
Licenses: GPL 3
Synopsis: Posterior probabilities for edges from knockdown data
Description:

This package provides a simple, fast Bayesian method for computing posterior probabilities for relationships between a single predictor variable and multiple potential outcome variables, incorporating prior probabilities of relationships. In the context of knockdown experiments, the predictor variable is the knocked-down gene, while the other genes are potential targets. It can also be used for differential expression/2-class data.

perl-text-reform 1.20
Channel: guix
Location: gnu/packages/perl.scm (gnu packages perl)
Home page: https://metacpan.org/release/Text-Reform
Licenses: GPL 1+
Synopsis: Manual text wrapping and reformatting
Description:

The form() subroutine may be exported from the module. It takes a series of format (or "picture") strings followed by replacement values, interpolates those values into each picture string, and returns the result. The effect is similar to the inbuilt perl format mechanism, although the field specification syntax is simpler and some of the formatting behaviour is more sophisticated.

r-ascenttraining 1.0.0
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://www.ascent.io/
Licenses: GPL 2
Synopsis: Ascent Training Datasets
Description:

Datasets to be used primarily in conjunction with Ascent training materials but also for the book SAMS Teach Yourself R in 24 Hours (ISBN: 978-0-672-33848-9). Version 1.0-7 is largely for use with the book; however, version 1.1 has a much greater focus on use with training materials, whilst retaining compatibility with the book.

r-codingmatrices 0.4.0
Propagated dependencies: r-matrix@1.7-4 r-fractional@0.1.3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=codingMatrices
Licenses: GPL 2+
Synopsis: Alternative Factor Coding Matrices for Linear Model Formulae
Description:

This package provides a collection of coding functions as alternatives to the standard functions in the stats package, which have names starting with contr.'. Their main advantage is that they provide a consistent method for defining marginal effects in factorial models. In a simple one-way ANOVA model the intercept term is always the simple average of the class means.

r-codecollection 0.1.3
Propagated dependencies: r-epi@2.61
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=codeCollection
Licenses: GPL 2
Synopsis: Collection of Codes with Labels
Description:

Includes several classifications such as International Statistical Classification of Diseases and Related Health Problems 10th Revision (ICD10), Anatomical Therapeutic Chemical (ATC) Classification, The International Classification of Diseases for Oncology (ICD-O-3), and International Classification of Primary Care (ICPC). Includes function that adds descriptive label to code value. Depending on classification following languages are available: English, Finnish, Swedish, and Latin.

r-npdoseresponse 0.1
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/zhangyk8/npDoseResponse/
Licenses: Expat
Synopsis: Nonparametric Estimation and Inference on Dose-Response Curves
Description:

This package provides a novel integral estimator for estimating the causal effects with continuous treatments (or dose-response curves) and a localized derivative estimator for estimating the derivative effects. The inference on the dose-response curve and its derivative is conducted via nonparametric bootstrap. The reference paper is Zhang, Chen, and Giessing (2024) <doi:10.48550/arXiv.2405.09003>.

r-tmap-cartogram 0.2
Propagated dependencies: r-tmap@4.2 r-sf@1.0-23 r-cartogram@0.3.0
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/r-tmap/tmap.cartogram
Licenses: GPL 3
Synopsis: Extension to 'tmap' for Creating Cartograms
Description:

This package provides new layer functions to tmap for creating various types of cartograms. A cartogram is a type of thematic map in which geographic areas are resized or distorted based on a quantitative variable, such as population. The goal is to make the area sizes proportional to the selected variable while preserving geographic positions as much as possible.

r-matrixgenerics 1.22.0
Propagated dependencies: r-matrixstats@1.5.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/MatrixGenerics
Licenses: Artistic License 2.0
Synopsis: S4 generic summary statistic functions for matrix-like objects
Description:

This package provides S4 generic functions modeled after the matrixStats API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

r-activitycounts 0.2.1
Propagated dependencies: r-lubridate@1.9.4 r-magrittr@2.0.4 r-seewave@2.2.4 r-signal@1.8-1 r-tibble@3.3.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/walkabillylab/activityCounts
Licenses: GPL 3
Synopsis: Generate ActiLife counts
Description:

ActiLife generates activity counts from data collected by Actigraph accelerometers. Actigraph is one of the most common research-grade accelerometers. There is considerable research validating and developing algorithms for human activity using ActiLife counts. Unfortunately, ActiLife counts are proprietary and difficult to implement if researchers use different accelerometer brands. The code creates ActiLife counts from raw acceleration data for different accelerometer brands.

perl-data-record 0.02
Propagated dependencies: perl-sub-uplevel@0.24
Channel: guix
Location: gnu/packages/perl.scm (gnu packages perl)
Home page: https://metacpan.org/release/Data-Record
Licenses: GPL 1+
Synopsis: Conditionally split data into records
Description:

This Perl module allows you to split data into records by not only specifying what you wish to split the data on, but also by specifying an "unless" regular expression. If the text in question matches the "unless" regex, it will not be split there. This allows us to do things like split on newlines unless newlines are embedded in quotes.

texlive-rpgicons 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://ctan.org/pkg/rpgicons
Licenses: LPPL 1.3c
Synopsis: Icons for tabletop role-playing games
Description:

This package provides a set of high-quality icons for use in notes for tabletop role-playing games. The icons are meant to be used in the body text, but they can also be used in other contexts such as graphics or diagrams. The package comes in two variants, one based on the l3draw package, and the other on PGF/TikZ.

texlive-ran-toks 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://ctan.org/pkg/ran_toks
Licenses: LPPL 1.0+
Synopsis: Randomise token strings
Description:

The package provides means of randomising lists of tokens, or lists of chunks of tokens. Two mechanisms for defining chunks are provided: the \ranToks command accepts an argument containing tokens to be randomised; and the \bRTVToks/\eRTVToks commands delimit a collection of tokens for randomising; each group inside a rtVw constitutes one of these (typically larger) token sets.

r-goweragreement 1.0-1
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: http://www.johnhughes.org
Licenses: GPL 2+
Synopsis: Bayesian Gower Agreement for Categorical Data
Description:

This package provides tools for applying the Bayesian Gower agreement methodology (presented in the package vignette) to nominal or ordinal data. The framework can accommodate any number of units, any number of coders, and missingness; and can handle both one-way and two-way random study designs. Influential units and/or coders can be identified easily using leave-one-out statistics.

r-modelselection 1.0.4
Propagated dependencies: r-survival@3.8-3 r-sparsematrixstats@1.22.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-pracma@2.4.6 r-ncvreg@3.16.0 r-mvtnorm@1.3-3 r-mgcv@1.9-4 r-mclust@6.1.2 r-matrix@1.7-4 r-l0learn@2.1.0 r-intervals@0.15.5 r-huge@1.3.5 r-glmnet@4.1-10 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://github.com/davidrusi/modelSelection
Licenses: GPL 2+
Synopsis: High-Dimensional Model Selection
Description:

Model selection and averaging for regression, generalized linear models, generalized additive models, graphical models and mixtures, focusing on Bayesian model selection and information criteria (Bayesian information criterion etc.). See Rossell (2025) <doi:10.5281/zenodo.17119597> (see the URL field below for its URL) for a hands-on book describing the methods, examples and suggested citations if you use the package.

r-terminaldigits 0.1.0
Propagated dependencies: r-rcpp@1.1.0 r-discretefit@0.1.3
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://cran.r-project.org/package=terminaldigits
Licenses: Expat
Synopsis: Tests of Uniformity and Independence for Terminal Digits
Description:

This package implements simulated tests for the hypothesis that terminal digits are uniformly distributed (chi-squared goodness-of-fit) and the hypothesis that terminal digits are independent from preceding digits (several tests of independence for r x c contingency tables). Also, for a number of distributions, implements Monte Carlo simulations for type I errors and power for the test of independence.

sbcl-easy-routes 0.0.0-0.7832f8b
Dependencies: sbcl-djula@0.2.0-2.6f14259 sbcl-hunchentoot@1.3.0-1.7686239 sbcl-hunchentoot-errors@0.0.1-0.69eb3bc sbcl-routes@0.2.5-1.1b79e85
Channel: guix
Location: gnu/packages/lisp-xyz.scm (gnu packages lisp-xyz)
Home page: https://github.com/mmontone/easy-routes/
Licenses: Expat
Synopsis: Routes handling utility on top of Hunchentoot
Description:

EASY-ROUTES is yet another routes handling system on top of Hunchentoot. It's just glue code for Restas routing subsystem (CL-ROUTES).

It supports:

  • dispatch based on HTTP method

  • arguments extraction from the url path

  • decorators

  • URL generation from route names

This package provides EASY-ROUTES, EASY-ROUTES+DJULA and EASY-ROUTES+ERRORS systems.

r-cbioportaldata 2.22.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-tcgautils@1.30.1 r-summarizedexperiment@1.40.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rtcgatoolbox@2.40.0 r-readr@2.1.6 r-raggedexperiment@1.34.0 r-multiassayexperiment@1.36.1 r-iranges@2.44.0 r-httr@1.4.7 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-digest@0.6.39 r-biocfilecache@3.0.0 r-biocbaseutils@1.12.0 r-anvil@1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://github.com/waldronlab/cBioPortalData
Licenses: AGPL 3
Synopsis: Exposes and Makes Available Data from the cBioPortal Web Resources
Description:

The cBioPortalData R package accesses study datasets from the cBio Cancer Genomics Portal. It accesses the data either from the pre-packaged zip / tar files or from the API interface that was recently implemented by the cBioPortal Data Team. The package can provide data in either tabular format or with MultiAssayExperiment object that uses familiar Bioconductor data representations.

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