Several functions and S3 methods to predict survival by using neural networks. We implemented Partial Logistic Artificial Neural Networks (PLANN) as proposed by Biganzoli et al. (1998) <https://pubmed.ncbi.nlm.nih.gov/9618776>.
This package provides functions to generate stop-word lists in 110 languages, in a way consistent across all the languages supported. The generated lists are based on the morphological tagset from the Universal Dependencies.
This package provides datasets in a format that can be easily consumed by torch dataloaders'. Handles data downloading from multiple sources, caching and pre-processing so users can focus only on their model implementations.
The package provides utility functions related to package development. These include functions that replace slots, and selectors for show methods. It aims to coalesce the various helper functions often re-used throughout the Bioconductor ecosystem.
This library is an implementation in Rust of the HEALPix tessellation. This implementation has been made by the Strasbourg astronomical Data Centre (Centre de Données astronomique de Strasbourg, CDS).
Sys-locale is small library for obtaining the current locale set for the system or application with the relevant platform APIs. The library is also no_std compatible by default, only relying on alloc.
Date::Range is a library to work with date ranges. It can be used to determine whether a given date is in a particular range, or what the overlap between two ranges are.
Lumberjack is a simple logging utility that can be a drop in replacement for Logger or ActiveSupport::BufferedLogger. It provides support for automatically rolling log files even with multiple processes writing the same log file.
Cool-retro-term (crt) is a terminal emulator which mimics the look and feel of the old cathode ray tube (CRT) screens. It has been designed to be eye-candy, customizable, and reasonably lightweight.
Enables Retrieval-Augmented Generation (RAG) workflows in R by combining local vector search using DuckDB with optional web search via the Tavily API. Supports OpenAI'- and Ollama'-compatible embedding models, full-text and HNSW (Hierarchical Navigable Small World) indexing, and modular large language model (LLM) invocation. Designed for advanced question-answering, chat-based applications, and production-ready AI pipelines. This package is the R equivalent of the python package RAGFlowChain available at <https://pypi.org/project/RAGFlowChain/>.
Nonfree firmware for AMD graphics chips. While most AMD graphics cards can be run with the free Mesa, some cards require a nonfree kernel module to run properly and support features like hibernation and advanced 3D.
This package provides a client for AWS Translate <https://aws.amazon.com/documentation/translate>, a machine translation service that will convert a text input in one language into a text output in another language.
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
This package provides a cascade select widget for usage in Shiny applications. This is useful for selection of hierarchical choices (e.g. continent, country, city). It is taken from the JavaScript library PrimeReact'.
This package provides different datasets parsed from Drugbank <https://www.drugbank.ca/covid-19> database using dbparser package. It is a smaller version from dbdataset package. It contains only information about COVID-19 possible treatment.
Analyses EuFMDiS output files in a Shiny App. The distributions of relevant output parameters are described in form of tables (quantiles) and plots. The App is called using eufmdis.adapt::run_adapt().
This package provides functions for the simulation and the nonparametric estimation of elliptical distributions, meta-elliptical copulas and trans-elliptical distributions, following the article Derumigny and Fermanian (2022) <doi:10.1016/j.jmva.2022.104962>.
This package provides functions to assess the goodness of fit of binary, multinomial and ordinal logistic models. Included are the Hosmer-Lemeshow tests (binary, multinomial and ordinal) and the Lipsitz and Pulkstenis-Robinson tests (ordinal).
R provides fantastic tools for changepoint analysis, but plots generated by the tools do not have the ggplot2 style. This tool, however, combines changepoint', changepoint.np and ecp together, and uses ggplot2 to visualize changepoints.
Provide a sample size calculator for micro-randomized trials (MRTs) based on methodology developed in Sample Size Calculations for Micro-randomized Trials in mHealth by Liao et al. (2016) <DOI:10.1002/sim.6847>.
Tokenize text into morphemes. The morphemepiece algorithm uses a lookup table to determine the morpheme breakdown of words, and falls back on a modified wordpiece tokenization algorithm for words not found in the lookup table.
Terrestrial and marine predictors for species distribution modelling from multiple sources, including WorldClim <https://www.worldclim.org/>,, ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/> and MARSPEC <http://www.marspec.org/>.
R implementation of S. Joe and F. Y. Kuo(2008) <DOI:10.1137/070709359>. The implementation is based on the data file new-joe-kuo-6.21201 <http://web.maths.unsw.edu.au/~fkuo/sobol/>.
This package provides a function that performs gene-permuting of a gene-set enrichment analysis (GSEA) calculation with or without the absolute filtering. Without filtering, users can perform (original) two-tailed or one-tailed absolute GSEA.