Retrospectiff is a common lisp library for reading and writing images in the TIFF (Tagged Image File Format) format.

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients barcodes. Data from 2015-11-01 snapshot.

regexpuâ s core functionality (i.e. `rewritePattern(pattern, flag)`), capable of translating ES6 Unicode regular expressions to ES5.

Base annotation databases for arabidopsis, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This package provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

This package provides functions to impute using random forest. It operates under full conditional specifications (multivariate imputation by chained equations).

This gem provides a plugin for the Ruby REPL to enable opening the current line in an external editor.

This package provides functions for cleaning and summarising water quality data for use in National Pollutant Discharge Elimination Service (NPDES) permit reasonable potential analyses and water quality-based effluent limitation calculations. Procedures are based on those contained in the "Technical Support Document for Water Quality-based Toxics Control", United States Environmental Protection Agency (1991).

Distribution functions and test for over-representation of short distances in the Liland distribution. Simulation functions are included for comparison.

Interesting igraph datasets from Melanie Walsh's sample social network datasets repository <https://github.com/melaniewalsh/sample-social-network-datasets>.

Constructs the normalized Laplacian matrix of a square matrix, returns the eigenvectors (singular vectors) and visualization of normalized Laplacian map.

This package implements several nonparametric regression approaches for the inclusion of covariate information on the receiver operating characteristic (ROC) framework.

This package provides a set of standard benchmark optimization functions for R and a common interface to sample them.

Data sets associated with modeling examples in Craig Starbuck's book, "The Fundamentals of People Analytics: With Applications in R".

Gene expression data from a breast cancer study published by Miller et al. in 2005, provided as an eSet.

Gene expression data from a breast cancer study published by Sotiriou et al. in 2007, provided as an eSet.

Gene expression data for the two breast cancer cohorts published by van't Veer and Van de Vijver in 2002.

This package is a collection of Strand-seq data. The main purpose is to demonstrate functionalities of the breakpointR package.

Git-review is a command-line tool that helps submitting Git branches to Gerrit for review, or fetching existing ones.

UnicodePlot provides the feature to make charts with Unicode characters. Supported charts are: barplot, boxplot, densityplot, histogram, lineplot, and scatterplot.

This package provides an alternative implementation of the Ruby GetText library that is approximately 12x faster yet thread safe.

This package provides a performant priority queue in pure ruby with support for changing priority using pairing heap data structure

Computation of one-, two- and three-dimensional pseudo-observations based on recurrent events and terminal events. Generalised linear models are fitted using generalised estimating equations. Technical details on the bivariate procedure can be found in "Bivariate pseudo-observations for recurrent event analysis with terminal events" (Furberg et al., 2021) <doi:10.1007/s10985-021-09533-5>.

Probability mass function, distribution function, quantile function, random generation and parameter estimation for the type I and III discrete Weibull distributions.