This gems add the --watch switch to the jekyll CLI interface. It allows Jekyll to rebuild your site when a file changes.

This class provides patches of some Beamer templates and commands for presentation from right to left. It requires Babel with the LuaTeX engine.

Designed to create and display complex tables with R, the rtables R package allows cells in an rtables object to contain any high-dimensional data structure, which can then be displayed with cell-specific formatting instructions. Additionally, the rtables.officer package supports export formats related to the Microsoft Office software suite, including Microsoft Word ('docx') and Microsoft PowerPoint ('pptx').

This package implements fast OpenMP parallel computing of Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. It handles missing data and now includes multivariate, unsupervised forests, quantile regression and solutions for class imbalanced data. It provides a fast interface using subsampling and confidence regions for variable importance.

Encodes simple feature ('sf') objects and coordinates, and decodes polylines using the Google polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).

This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.

This package is a collection of gene expression data from a breast cancer study published in Wang et al. 2005 and Minn et al 2007.

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends the monocle package for use in chromatin accessibility data.

Helps to perform linear regression analysis by reducing manual effort. Reduces the independent variables based on specified p-value and Variance Inflation Factor (VIF) level.

This is a set of R functions that allows you to generate precise figures. This tool will create clean markdown reports about what you just discovered.

The goal of RangeArrays is to provide efficient and convenient array data structures where the columns of the arrays are generated (on the fly) by Ranges.

Number::Range is an object-oriented interface to test if a number exists in a given range, and to be able to manipulate the range.

This is an old version of revtex, and is kept as a courtesy to users having difficulty with the incompatibility of that latest version.

Data for the vignette and examples in RFlocalfdr'. Contains a dataset of 1103547 importance values, and the table of variables used in the random forest splits. The data is Chromosome 22 taken from Auton et al. (2015) <doi:10.1038/nature15393>. It also contains a 51 samples by 22283 genes data set taken from Spira et al. (2004) <doi:10.1165/rcmb.2004-0273OC>.

Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions. Borstein & O'Meara (2018) <doi:10.7717/peerj.5179>.

Statistical functions to describe a Pareto Positive Stable (PPS) distribution and fit it to real data. Graphical and statistical tools to validate the fits are included.

This package provides an R interface to the PCATS API <https://pcats.research.cchmc.org/api/__docs__/>, allowing R users to submit tasks and retrieve results.

Calculates the pooled mean group (PMG) estimator for dynamic panel data models, as described by Pesaran, Shin and Smith (1999) <doi:10.1080/01621459.1999.10474156>.

This package contains the weights from pre-trained shallow sparsely-connected autoencoders. This data is required for getting the gene set scores with NetActivity package.

This library exports three symbols: with-raw-io, read-char, and read-line, to provide raw POSIX I/O in Common Lisp.

Mini-portile is a port/recipe system for Ruby developers. It provides a standard way to compile against specific versions of libraries to reproduce user environments.

Mini-portile is a port/recipe system for Ruby developers. It provides a standard way to compile against specific versions of libraries to reproduce user environments.

The package enables the user to typeset version control information provided by RCS keywords (e.g., $ID: ... $) in LaTeX documents that contain multiple TeX files.

rifiComparative is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.