This package provides an easy way to compute the Theil Sehn Regression method and also the Siegel Regression Method which are both robust methods base on the median of slopes between all pairs of data. In contrast with the least squared linear regression, these methods are not sensitive to outliers. Theil, H. (1992) <doi:10.1007/978-94-011-2546-8_20>, Sen, P. K. (1968) <doi:10.1080/01621459.1968.10480934>.

This package provides functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).

The roundrect macros for MetaPost provide ways to produce rounded rectangles, which may or may not contain a title bar or text (the title bar may itself contain text).

Genexpression data from a breast cancer study published by van't Veer et al. in 2002 and van de Vijver et al. in 2002, provided as an eSet.

These are bartMachine's Java dependency libraries. Note: this package has no functionality of its own and should not be installed as a standalone package without bartMachine.

This package provides functions to automatically build a directory structure for a new R project. Using this structure, ProjectTemplate automates data loading, preprocessing, library importing and unit testing.

emacs-wrap-region is a minor mode for Emacs that wraps a region with punctuations. For tagged markup modes, such as HTML and XML, it wraps with tags.

rst.linker automatically replaces text by a reStructuredText external reference or timestamps. It's primary purpose is to augment the changelog, but it can be used for other documents, too.

This package provides a daily counts of the Coronavirus (COVID19) cases by districts and country. Data source: Epidemiological Unit, Ministry of Health, Sri Lanka <https://www.epid.gov.lk/web/>.

An R client for the freecurrencyapi.com currency conversion API. The API requires registration of an API key. You can find the full API documentation at <https://freecurrencyapi.com/docs> .

This package contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.

Fitting multivariate response models with random effects on one or two levels; whereby the (one-dimensional) random effect represents a latent variable approximating the multivariate space of outcomes, after possible adjustment for covariates. The method is particularly useful for multivariate, highly correlated outcome variables with unobserved heterogeneities. Applications include regression with multivariate responses, as well as multivariate clustering or ranking problems. See Zhang and Einbeck (2024) <doi:10.1007/s42519-023-00357-0>.

This package defines sparse three-dimensional arrays and supports standard operations on them. The package also includes utility functions for matrix calculations that are common in statistics, such as quadratic forms.

This module provides line editing support via the Readline library for GNU Guile. Use the (ice-9 readline) module and call its activate-readline procedure to enable it.

ProgressBar is a simple library for displaying progress bars. The maximum value is configurable, and additional information can be displayed like the percentage completion, estimated time remaining, elapsed time and rate.

The image of the amino acid transform on the protein level is drawn, and the automatic routing of the functional elements such as the domain and the mutation site is completed.

Changes the column names of the inputted dataset to the correct names from the Uniform Crime Report codebook for the "Offenses Known and Clearance by Arrest" datasets from 1998-2014.

lib::relative module proposes a more straightforward method than adding a path to @INC: take a path relative to the current file, absolutize it, and add it to @INC.

jaro_winkler is an implementation of Jaro-Winkler distance algorithm. It is written as a C extension and will fallback to a pure Ruby implementation on platforms where this is unsupported.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was ATH1-121501\_probe\_tab.

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package girafe'.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430A\_2\_probe\_tab.

This package provides tools for detecting drug-protein interactions and estimating IC50 values from chemoproteomics data. Implements semi-parametric isotonic regression, bootstrapping, and curve fitting to evaluate compound effects on protein abundance.

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.