This is a comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. It provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

This package provides a set of predicates and assertions for checking the types of variables. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

rotate-text allows you rotate to commonly interchanged text with a single keystroke. For example, you can toggle between "frame-width" and "frame-height", between "public", "protected" and "private" and between "variable1", "variable2" through "variableN".

EventMachine implements a single-threaded engine for arbitrary network communications. EventMachine wraps all interactions with sockets, allowing programs to concentrate on the implementation of network protocols. It can be used to create both network servers and clients.

Spectroscope is a Behavior-Driven Development (BDD) framework built on RubyTest, designed to emulate RSpec in most respects. It is assertion framework independent so any number of assertion systems can be used, such as Assay or AE.

Defines the classes used for "class comparison" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.

Allows manual creation of themes and logos to be used in applications created using the shinydashboard package. Removes the need to change the underlying css code by wrapping it into a set of convenient R functions.

Summarise patient-level drug utilisation cohorts using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. New users and prevalent users cohorts can be generated and their characteristics, indication and drug use summarised.

This grants the functionality of the Maxar Geospatial Platform (MGP) Streaming API. It can search for images using the WFS method. It can Download images using WMS WMTS. It can also Download a full resolution image.

This package provides functionality for random generation of spatial data in the spatstat family of packages. It generates random spatial patterns of points according to many simple rules (complete spatial randomness, Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns (thinning, random shift, jittering), simulated realisations of random point processes (simple sequential inhibition, Matern inhibition models, Matern cluster process, Neyman-Scott cluster processes, log-Gaussian Cox processes, product shot noise cluster processes) and simulation of Gibbs point processes (Metropolis-Hastings birth-death-shift algorithm, alternating Gibbs sampler).

This package speeds up the derfinder package when using multiple cores. It is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

This is a package for estimation of one-dimensional probability distributions including kernel density estimation, weighted empirical cumulative distribution functions, Kaplan-Meier and reduced-sample estimators for right-censored data, heat kernels, kernel properties, quantiles and integration.

ReverseDiff.jl is a fast and compile-able tape-based reverse mode AD, that implements methods to take gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really).

This gem implements bcrypt_pbkdf, which is a variant of PBKDF2 (Password-Based Key Derivation Function 2) with bcrypt-based pseudorandom function. This is currently used by net-ssh to read password encrypted Ed25519 keys.

vagrant-spec is a both a specification of how Vagrant and its various components should behave as well as a library of testing helpers that let you write your own unit and acceptance tests for Vagrant.

Retail shopping transactions for 2,469 households over one year. Originates from the 84.51° Complete Journey 2.0 source files <https://www.8451.com/area51> which also includes useful metadata on products, coupons, campaigns, and promotions.

This package provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.

Generate a local library copy with relevant packages. All packages currently found within the search path - except base packages - will be copied to the directory provided and can be used later on with the .libPaths() function.

This package provides a set of predicates and assertions for checking the properties of files and connections. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Add a Bioconductor themed CSS loader to your shiny app. It is based on the shinycustomloader R package. Use a spinning Bioconductor note loader to enhance your shiny app loading screen. This package is intended for developer use.

UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations.

This package implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. It includes a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.

This package provides tools to create a lightweight Shiny wrapper for the css-loaders created by Luke Hass https://github.com/lukehaas/css-loaders. Wrapping a Shiny output will automatically show a loader when the output is (re)calculating.