All animal behaviour occurs sequentially. The package has a number of functions to format sequence data from different sources, to analyse sequential behaviour and communication in animals. It also has functions to plot the data and to calculate the entropy of sequences.

Detection of change-points for variance of heteroscedastic Gaussian variables with piecewise constant variance function. Adelfio, G. (2012), Change-point detection for variance piecewise constant models, Communications in Statistics, Simulation and Computation, 41:4, 437-448, <doi:10.1080/03610918.2011.592248>.

Generates a visualization of binary classifier performance as a grid of diagnostic plots with just one function call. Includes ROC curves, prediction density, accuracy, precision, recall and calibration plots, all using ggplot2 for easy modification. Debug your binary classifiers faster and easier!

Do most of the painful data preparation for a data science project with a minimum amount of code; Take advantages of data.table efficiency and use some algorithmic trick in order to perform data preparation in a time and RAM efficient way.

Simulation from an mrgsolve <https://cran.r-project.org/package=mrgsolve> model using a parallel backend. Input data sets are split (chunked) and simulated in parallel using mclapply() or future_lapply() <https://cran.r-project.org/package=future.apply>.

This package provides tools for drawing Statistical Process Control (SPC) charts. This package supports the NHS Making Data Count programme, and allows users to draw XmR charts, use change points and apply rules with summary indicators for when rules are breached.

This package provides a small, dependency-free way to generate random names. Methods provided include the adjective-surname approach of Docker containers ('<https://github.com/moby/moby/blob/master/pkg/namesgenerator/names-generator.go>'), and combinations of common English or Spanish words.

Design, backtest, and analyze portfolio strategies using simple, English-like function chains. Includes technical indicators, flexible stock selection, portfolio construction methods (equal weighting, signal weighting, inverse volatility, hierarchical risk parity), and a compact backtesting engine for portfolio returns, drawdowns, and summary metrics.

Facilitates secret management by storing credentials in a dedicated file, keeping them out of your code base. The secrets are stored without encryption. This package is compatible with secrets stored by the SecretsProvider Python package <https://pypi.org/project/SecretsProvider/>.

This package implements different kinds of bootstraps to estimate sampling variation from survey data with complex designs. Includes the rescaled bootstrap described in Rust and Rao (1996) <doi:10.1177/096228029600500305> and Rao and Wu (1988) <doi:10.1080/01621459.1988.10478591>.

Includes the results of general, local, and presidential elections held in Turkey between 1995 and 2024, broken down by provinces and overall national results. It facilitates easy processing of this data and the creation of visual representations based on these election results.

This is a package for interactive Reingold-Tilford tree diagrams created using D3.js, where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame.

This package contains pre-built mouse (GPL1261) database of gene expression profiles. The gene expression data was downloaded from NCBI GEO, preprocessed and normalized consistently. The biological context of each sample was recorded and manually verified based on the sample description in GEO.

This package contains pre-built human (GPL96) database of gene expression profiles. The gene expression data was downloaded from NCBI GEO, preprocessed and normalized consistently. The biological context of each sample was recorded and manually verified based on the sample description in GEO.

This package performs the calibration procedure proposed by Sung et al. (2018+) <arXiv:1806.01453>. This calibration method is particularly useful when the outputs of both computer and physical experiments are binary and the estimation for the calibration parameters is of interest.

This computes Lipinski Rule of Five parameters and offers visualization for drug discovery. It analyzes molecular properties like molecular weight, hydrogen bond donors, acceptors, and ALogP, providing histograms and pass/fail status plots for efficient compound evaluation, aiding in drug development.

Create sampling designs using the surface reconstruction algorithm. Original method by: Olsson, D. 2002. A method to optimize soil sampling from ancillary data. Poster presenterad at: NJF seminar no. 336, Implementation of Precision Farming in Practical Agriculture, 10-12 June 2002, Skara, Sweden.

This package provides a wrapper to a set of algorithms designed to recognise positional cues present in hierarchical for-human Tables (which would normally be interpreted visually by the human brain) to decompose, then reconstruct the data into machine-readable LongForm Dataframes.

Org Roam UI is meant as a successor of Org Roam server that extends functionality of Org Roam with a web application that runs side-by-side with Emacs. It provides a web interface for navigating around notes created within Org Roam.

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.

This package creates a data frame with the residuals of partial regressions of the main explanatory variable and the variable of interest. This method follows the Frisch-Waugh-Lovell theorem, as explained in Lovell (2008) <doi:10.3200/JECE.39.1.88-91>.

Enables the manufacturing, analysis and display of pressure volume curves. From the progression of the curves, turgor loss point, osmotic potential and apoplastic fraction can be derived. Methods adapted from Bartlett, Scoffoni and Sack (2012) <doi:10.1111/j.1461-0248.2012.01751.x>.

Org-Roam-UI is a frontend for exploring and interacting with your org-roam notes.

Org-Roam-UI is meant a successor of org-roam-server that extends functionality of org-roam with a Web app that runs side-by-side with Emacs.