This package provides functions to automatically build a directory structure for a new R project. Using this structure, ProjectTemplate automates data loading, preprocessing, library importing and unit testing.

emacs-wrap-region is a minor mode for Emacs that wraps a region with punctuations. For tagged markup modes, such as HTML and XML, it wraps with tags.

rst.linker automatically replaces text by a reStructuredText external reference or timestamps. It's primary purpose is to augment the changelog, but it can be used for other documents, too.

This package provides a daily counts of the Coronavirus (COVID19) cases by districts and country. Data source: Epidemiological Unit, Ministry of Health, Sri Lanka <https://www.epid.gov.lk/web/>.

An R client for the freecurrencyapi.com currency conversion API. The API requires registration of an API key. You can find the full API documentation at <https://freecurrencyapi.com/docs> .

This package contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.

Fitting multivariate response models with random effects on one or two levels; whereby the (one-dimensional) random effect represents a latent variable approximating the multivariate space of outcomes, after possible adjustment for covariates. The method is particularly useful for multivariate, highly correlated outcome variables with unobserved heterogeneities. Applications include regression with multivariate responses, as well as multivariate clustering or ranking problems. See Zhang and Einbeck (2024) <doi:10.1007/s42519-023-00357-0>.

This package defines sparse three-dimensional arrays and supports standard operations on them. The package also includes utility functions for matrix calculations that are common in statistics, such as quadratic forms.

This module provides line editing support via the Readline library for GNU Guile. Use the (ice-9 readline) module and call its activate-readline procedure to enable it.

ProgressBar is a simple library for displaying progress bars. The maximum value is configurable, and additional information can be displayed like the percentage completion, estimated time remaining, elapsed time and rate.

The image of the amino acid transform on the protein level is drawn, and the automatic routing of the functional elements such as the domain and the mutation site is completed.

This package provides curated early warning data on landslides in Sri Lanka during the Ditwah storm. It includes structured, machine-readable tidy dataset. This is developed for education and research purposes.

Changes the column names of the inputted dataset to the correct names from the Uniform Crime Report codebook for the "Offenses Known and Clearance by Arrest" datasets from 1998-2014.

lib::relative module proposes a more straightforward method than adding a path to @INC: take a path relative to the current file, absolutize it, and add it to @INC.

jaro_winkler is an implementation of Jaro-Winkler distance algorithm. It is written as a C extension and will fallback to a pure Ruby implementation on platforms where this is unsupported.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was ATH1-121501\_probe\_tab.

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package girafe'.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430A\_2\_probe\_tab.

This package provides tools for detecting drug-protein interactions and estimating IC50 values from chemoproteomics data. Implements semi-parametric isotonic regression, bootstrapping, and curve fitting to evaluate compound effects on protein abundance.

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

This will allow easier management of a CRAN-style repository on local networks (i.e. not on CRAN). This might be necessary where hosted packages contain intellectual property owned by a corporation.

This package provides a suite of compiled functions calculating rolling mins, means, maxes and other statistics. This package is designed to meet the needs of data processing systems for environmental time series.

Estimates the weights and measure of robustness to treatment effect heterogeneity attached to two-way fixed effects regressions. Clément de Chaisemartin, Xavier D'HaultfŠuille (2020) <DOI: 10.1257/aer.20181169>.

dvc-render is a library for rendering data stored in DVC plots format into different output formats, like Vega. It can also generate HTML and MarkDown reports containing multiple plots.