This program is derived from comint-mode and provides the following features:

• TAB completion same as Node.js REPL

• file name completion in string

• incremental history search

This library lets elisp authors easily define an idiomatic command to reformat the current buffer using a command-line program, together with an optional minor mode which can apply this command automatically on save.

This package provides a class for typesetting scripts containing both lyrics and prose, in the style used by the student revues (revy) at the Faculties of Science at the University of Copenhagen (uchp).

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat-Focus\_probe\_tab.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat230\_PM\_probe\_tab.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\_tag\_probe\_tab.

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

This package implements the procedures suggested in Esarey and Sumner (2017) <http://justinesarey.com/interaction-overconfidence.pdf> for controlling the false discovery rate when constructing marginal effects plots for models with interaction terms.

The Impact Factor of a journal reported by Journal Citation Reports ('JCR') of Clarivate Analytics is provided. The impact factor is available for those journals only that were included Journal Citation Reports JCR'.

Effect sizes, diagnostics and performance metrics for multilevel and mixed effects models. Includes marginal and conditional R2 estimates for linear mixed effects models based on Johnson (2014) <doi:10.1111/2041-210X.12225>.

Implementations of algorithms from Learning Sparse Penalties for Change-point Detection using Max Margin Interval Regression, by Hocking, Rigaill, Vert, Bach <http://proceedings.mlr.press/v28/hocking13.html> published in proceedings of ICML2013.

Ratings, votes, swear words and sentiments are analysed for the show SouthPark through a Shiny application after web scraping from IMDB and the website <https://southpark.fandom.com/wiki/South_Park_Archives>.

RegioneReloaded is a package that allows simultaneous analysis of associations between genomic region sets, enabling clustering of data and the creation of ready-to-publish graphs. It takes over and expands on all the features of its predecessor regioneR. It also incorporates a strategy to improve p-value calculations and normalize z-scores coming from multiple analysis to allow for their direct comparison. RegioneReloaded builds upon regioneR by adding new plotting functions for obtaining publication-ready graphs.

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

This package provides functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Find functions in an unstructured directory and explore their dependencies. Sourcing of R source files is performed without side-effects: from R scripts that have executable code and function definitions only functions are sourced.

Computes spatial position models: the potential model as defined by Stewart (1941) <doi:10.1126/science.93.2404.89> and catchment areas as defined by Reilly (1931) or Huff (1964) <doi:10.2307/1249154>.

Since version v0.19.4, xplr search will default to native fuzzy matching.

This plugin is for people who prefer the old regex based filtered search because it allows more control for advanced use cases.

This package provides a method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. ActiveDriverWGS detects coding and noncoding driver elements using whole genome sequencing data.

This package takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.

Query, extract, and plot genealogical data from The Mathematics Genealogy Project <https://mathgenealogy.org/>. Data is gathered from the WebSocket server run by the geneagrapher-core project <https://github.com/davidalber/geneagrapher-core>.

This is a comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. It provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

This package provides a set of predicates and assertions for checking the types of variables. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

rotate-text allows you rotate to commonly interchanged text with a single keystroke. For example, you can toggle between "frame-width" and "frame-height", between "public", "protected" and "private" and between "variable1", "variable2" through "variableN".