Exposes an annotation databases generated from several sources by exposing these as EpiTxDb object. Generated for Homo sapiens/hg38.

Calculates Distinctiveness Centrality in social networks. For formulas and descriptions, see Fronzetti Colladon and Naldi (2020) <doi:10.1371/journal.pone.0233276>.

Fast, bash-like range expansion. Expand a range of numbers or letters, uppercase or lowercase. See the benchmarks. Used by micromatch.

This package provides the lengths of mRNA transcripts for a number of genomes and gene ID formats, largely based on the UCSC table browser.

This package provides functions for handling translating between different identifieres using the Biocore Data Team data-packages (e.g. org.Bt.eg.db).

This gems add the --watch switch to the jekyll CLI interface. It allows Jekyll to rebuild your site when a file changes.

These Ruby bindings are not intended to be directly used, but rather used by higher level bindings like those provided by CZTop.

This package provides a Hoe plugin with various Markdown helpers, which can be used to e.g. hyperlink Markdown documentation between project files.

This class provides patches of some Beamer templates and commands for presentation from right to left. It requires Babel with the LuaTeX engine.

This package contains ARACNe-inferred networks from TCGA tumor datasets. It also contains a function to export them into plain-text format.

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.

This package provides a wrapper around the same API <https://app.americansocceranalysis.com/api/v1/__docs__/> that powers the American Soccer Analysis app.

This package performs cluster analysis of mixed-type data using Spectral Clustering, see F. Mbuga and, C. Tortora (2022) <doi:10.3390/stats5010001>.

This package implements fast OpenMP parallel computing of Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. It handles missing data and now includes multivariate, unsupervised forests, quantile regression and solutions for class imbalanced data. It provides a fast interface using subsampling and confidence regions for variable importance.

Designed to create and display complex tables with R, the rtables R package allows cells in an rtables object to contain any high-dimensional data structure, which can then be displayed with cell-specific formatting instructions. Additionally, the rtables.officer package supports export formats related to the Microsoft Office software suite, including Microsoft Word ('docx') and Microsoft PowerPoint ('pptx').

This package is a collection of gene expression data from a breast cancer study published in Wang et al. 2005 and Minn et al 2007.

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends the monocle package for use in chromatin accessibility data.

This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.

Encodes simple feature ('sf') objects and coordinates, and decodes polylines using the Google polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).

This package provides a lightweight wrapper around the RSQLite package for streamlined loading of data from tabular files (i,e. text delimited files like Comma Separated Values and Tab Separated Values, Microsoft Excel, and Arrow Inter-process Communication files) in SQLite databases. Includes helper functions for inspecting the structure of the input files, and some functions to simplify activities on the SQLite tables.

This is a set of R functions that allows you to generate precise figures. This tool will create clean markdown reports about what you just discovered.

The goal of RangeArrays is to provide efficient and convenient array data structures where the columns of the arrays are generated (on the fly) by Ranges.

Number::Range is an object-oriented interface to test if a number exists in a given range, and to be able to manipulate the range.