ChIPComp implements a statistical method for quantitative comparison of multiple ChIP-seq datasets. It detects differentially bound sharp binding sites across multiple conditions considering matching control in ChIP-seq datasets.

This package implements different performance measures for classification and ranking tasks. Area under curve (AUC), precision at a given recall, F-score for single and multiple classes are available.

This package implements general purpose tools, such as functions for sampling and basic manipulation of Brazilian lawsuits identification number. It also implements functions for text cleaning, such as accentuation removal.

In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics that are not provided by base R methods related to model fitting.

This package implements a parametric bootstrap test and a Kenward Roger modification of F-tests for linear mixed effects models and a parametric bootstrap test for generalized linear mixed models.

Lemon is a unit testing framework that enforces highly formal case-to-class and unit-to-method test construction. This enforcement can help focus concern on individual units of behavior.

MSpec is a specialized framework that is syntax-compatible with RSpec 2 for basic features. MSpec contains additional features that assist in writing specs for Ruby implementations in ruby/spec.

The package contains functions to perform normalization of high-throughput qPCR data. Basic functions for processing raw Ct data plus functions to generate diagnostic plots are also available.

The package r-alevinqc generates quality control reports summarizing the output from an alevin run. The reports can be generated as HTML or PDF files, or as Shiny applications.

This package provides some low-level utilities to use for R package development. It currently provides managers for multiple package specific options and registries, vignette, unit test and bibtex related utilities.

This package provides an R interface to the QuickJS portable JavaScript engine. The engine is bundled entirely within the package, requiring no external system dependencies beyond a C compiler.

This package provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. It is designed to work with FlowSOM and flow-cytometry use-cases.

ReadyMedia (formerly known as MiniDLNA) is a simple media server, which serves multimedia content to compatible clients on the network. It aims to be fully compliant with DLNA and UPnP-AV standards.

maSigPro is a regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA-Seq experiments.

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

This package provides a model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

This package offers a quick and straight-forward way to explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.

This package provides functions used to build R packages. It locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.

ExtRemes is a suite of functions for carrying out analyses on the extreme values of a process of interest; be they block maxima over long blocks or excesses over a high threshold.

This package provides a collection of perceptually uniform color maps made by Peter Kovesi (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the Centre for Exploration Targeting (CET).

This package provides R bindings to the Sundown Markdown rendering library (https://github.com/vmg/sundown). Markdown is a plain-text formatting syntax that can be converted to XHTML or other formats.

This package provides tools to fit and predict with the high-dimensional principal fitted components model. This model is described by Cook, Forzani, and Rothman (2012) doi:10.1214/11-AOS962.

CZMQ Ruby bindings, based on the generated low-level FFI bindings of CZMQ. The focus of of CZTop is on being easy to use and providing first class support for security mechanisms.