Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data.

This package provides high performance functions for row and column operations on sparse matrices. Currently, the optimizations are limited to data in the column sparse format.

This is a package to perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

This package provides a Mocha adapter for Bacon, allowing you to use the Mocha stubbing and mocking library with Bacon, a small RSpec clone.

Rebecca Emacs theme is a dark theme with purple/violet colors, based on the Dracula theme for Emacs and the Gloom theme for Atom.

This library exports three symbols: with-raw-io, read-char, and read-line, to provide raw POSIX I/O in Common Lisp.

This package provides a Jekyll plugin to add metadata tags for search engines and social networks to better index and display your site's content.

This package implements full Bayesian analysis for calibrating mathematical models with new methodology for modeling the discrepancy function. It allows for emulation, calibration and prediction using complex mathematical model outputs and experimental data. See the reference: Mengyang Gu and Long Wang, 2018, Journal of Uncertainty Quantification; Mengyang Gu, Fangzheng Xie and Long Wang, 2022, Journal of Uncertainty Quantification; Mengyang Gu, Kyle Anderson and Erika McPhillips, 2023, Technometrics.

Input widget that allows to construct complex filtering queries in Shiny'. It's a wrapper for JavaScript library jQuery-QueryBuilder', check <https://querybuilder.js.org/>.

This package stores all schemas required by various alabaster.* packages. No computation should be performed by this package, as that is handled by alabaster.base.

This package provides summarized MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

This is an R package that integrates the installation of doublet-detection methods. In addition, this tool is used for execution and benchmark of those eight mentioned methods.

This package provides functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011).

Mupen64Plus is a cross-platform plugin-based Nintendo 64 (N64) emulator which is capable of accurately playing many games. This package contains the Z64 RSP processor plugin.

This package provides a collection of forecast verification routines developed for the SPECS FP7 project. The emphasis is on comparative verification of ensemble forecasts of weather and climate.

This package provides the dataset and an implementation of the method illustrated in Friel, N., Rastelli, R., Wyse, J. and Raftery, A.E. (2016) <DOI:10.1073/pnas.1606295113>.

This package performs variable selection in high-dimensional sparse GLARMA models. For further details we refer the reader to the paper Gomtsyan et al. (2022), <arXiv:2208.14721>.

Read-only-cfg is an Emacs minor mode that can automatically make files read-only based on user configuration. User configuration may be prefix directories or regex patterns.

Package including functions and interactive shiny application for the psychometric analysis of educational tests, psychological assessments, health-related and other types of multi-item measurements, or ratings from multiple raters.

The package contains functions for calculate direct and model-based estimators for liquid association. It also provides functions for testing the existence of liquid association given a gene triplet data.

Mupen64Plus is a cross-platform plugin-based Nintendo 64 (N64) emulator which is capable of accurately playing many games. This package contains the high-level emulation (HLE) RSP processor plugin.

This package repeats item of an index if a page or column break occurs within a list of subitems. This helps to find out to which main item a subitem belongs.

An R Commander plug-in providing an integrated solution to perform a series of text mining tasks such as importing and cleaning a corpus, and analyses like terms and documents counts, vocabulary tables, terms co-occurrences and documents similarity measures, time series analysis, correspondence analysis and hierarchical clustering. Corpora can be imported from spreadsheet-like files, directories of raw text files, as well as from Dow Jones Factiva', LexisNexis', Europresse and Alceste files.

The mixed integer programming library MIPLIB (see <http://miplib.zib.de/>) is commonly used to compare the performance of mixed integer optimization solvers. This package provides functions to access MIPLIB from the R Optimization Infrastructure ('ROI'). More information about MIPLIB can be found in the paper by Koch et al. available at <http://mpc.zib.de/index.php/MPC/article/viewFile/56/28>. The README.md file illustrates how to use this package.