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   / / /  \/_// / /   / / / \ \ \        \ \ \
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r-dispositioneffect 1.0.1
Propagated dependencies: r-purrr@1.0.4 r-progress@1.2.3 r-magrittr@2.0.3 r-lubridate@1.9.4 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://marcozanotti.github.io/dispositionEffect/
Licenses: Expat
Synopsis: Analysis of Disposition Effect on Financial Portfolios
Description:

Evaluate the presence of disposition effect and others irrational investor's behaviors based solely on investor's transactions and financial market data. Experimental data can also be used to perform the analysis. Four different methodologies are implemented to account for the different nature of human behaviors on financial markets. Novel analyses such as portfolio driven and time series disposition effect are also allowed.

r-evolutionarygames 0.1.2
Propagated dependencies: r-reshape2@1.4.4 r-mass@7.3-65 r-interp@1.1-6 r-ggplot2@3.5.2 r-geometry@0.5.2 r-desolve@1.40
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://cran.r-project.org/package=EvolutionaryGames
Licenses: GPL 2
Synopsis: Important Concepts of Evolutionary Game Theory
Description:

Evolutionary game theory applies game theory to evolving populations in biology, see e.g. one of the books by Weibull (1994, ISBN:978-0262731218) or by Sandholm (2010, ISBN:978-0262195874) for more details. A comprehensive set of tools to illustrate the core concepts of evolutionary game theory, such as evolutionary stability or various evolutionary dynamics, for teaching and academic research is provided.

r-relativedistclust 0.1.0
Propagated dependencies: r-proxy@0.4-27 r-ggpubr@0.6.0 r-ggplot2@3.5.2 r-factoextra@1.0.7 r-compositions@2.0-8
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RelativeDistClust
Licenses: GPL 3
Synopsis: Clustering with a Novel Non Euclidean Relative Distance
Description:

Using the novel Relative Distance to cluster datasets. Implementation of a clustering approach based on the k-means algorithm that can be used with any distance. In addition, implementation of the Hartigan and Wong method to accommodate alternative distance metrics. Both methods can operate with any distance measure, provided a suitable method is available to compute cluster centers under the chosen metric. Additionally, the k-medoids algorithm is implemented, offering a robust alternative for clustering without the need of computing cluster centers under the chosen metric. All three methods are designed to support Relative distances, Euclidean distances, and any user-defined distance functions. The Hartigan and Wong method is described in Hartigan and Wong (1979) <doi:10.2307/2346830> and an explanation of the k-medoids algorithm can be found in Reynolds et al (2006) <doi:10.1007/s10852-005-9022-1>.

r-photobiologyinout 0.4.32
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.2.1 r-suncalcmeeus@0.1.3 r-stringr@1.5.1 r-readxl@1.4.5 r-readr@2.1.5 r-photobiology@0.14.0 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-dplyr@1.1.4 r-colorspec@1.8-0 r-anytime@0.3.11
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://docs.r4photobiology.info/photobiologyInOut/
Licenses: GPL 2+
Synopsis: Read Spectral and Logged Data from Foreign Files
Description:

This package provides functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

r-profilelikelihood 1.3
Propagated dependencies: r-nlme@3.1-168 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=ProfileLikelihood
Licenses: GPL 3+
Synopsis: Profile Likelihood for a Parameter in Commonly Used Statistical Models
Description:

This package provides profile likelihoods for a parameter of interest in commonly used statistical models. The models include linear models, generalized linear models, proportional odds models, linear mixed-effects models, and linear models for longitudinal responses fitted by generalized least squares. The package also provides plots for normalized profile likelihoods as well as the maximum profile likelihood estimates and the kth likelihood support intervals.

r-mousethymusageing 1.16.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-s4vectors@0.46.0 r-experimenthub@2.16.0 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MouseThymusAgeing
Licenses: GPL 3
Synopsis: Single-cell Transcriptomics Data of the Ageing Mouse Thymus
Description:

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

r-jadelizardoptions 1.0.1
Propagated dependencies: r-tibble@3.2.1 r-magrittr@2.0.3 r-ggplot2@3.5.2 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jadeLizardOptions
Licenses: GPL 3
Synopsis: Trading Jade Lizard Option Strategies
Description:

Jade Lizard and Reverse Jade Lizard Option Strategies are presented here through their Graphs. The graphic indicators, strategies, calculations, functions and all the discussions are for academic, research, and educational purposes only and should not be construed as investment advice and come with absolutely no Liability. Russell A. Stultz (â The option strategy desk reference: an essential reference for option traders (First edition.)â , 2019, ISBN: 9781949443912).

r-bayesianreasoning 0.4.3
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-scales@1.4.0 r-reshape2@1.4.4 r-png@0.1-8 r-magrittr@2.0.3 r-gt@1.1.0 r-ggtext@0.1.2 r-ggplot2@3.5.2 r-ggforce@0.4.2 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://github.com/gorkang/BayesianReasoning
Licenses: CC0
Synopsis: Plot Positive and Negative Predictive Values for Medical Tests
Description:

This package provides functions to plot and help understand positive and negative predictive values (PPV and NPV), and their relationship with sensitivity, specificity, and prevalence. See Akobeng, A.K. (2007) <doi:10.1111/j.1651-2227.2006.00180.x> for a theoretical overview of the technical concepts and Navarrete et al. (2015) for a practical explanation about the importance of their understanding <doi:10.3389/fpsyg.2015.01327>.

r-surface-analytics 0.1.0
Propagated dependencies: r-randomforest@4.7-1.2 r-multcompview@0.1-10 r-ggplot2@3.5.2 r-factominer@2.11 r-factoextra@1.0.7 r-effectsize@1.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=suRface.analytics
Licenses: GPL 3
Synopsis: Statistical Analysis and Visualization of Surface-Engineered Material Properties
Description:

This package provides a collection of functions for statistical and multivariate analysis of surface-related data, with a focus on antimicrobial activity and omniphobicity. Designed to support materials scientists and researchers in exploring structureâ function relationships in surface-engineered materials through reproducible and interpretable workflows. For more details, see Li et al. (2021) <doi:10.1002/advs.202100368>, and Kwon et al. (2020) <doi:10.3390/polym12081826>.

r-antaresprocessing 0.18.3
Propagated dependencies: r-data-table@1.17.4 r-antaresread@2.9.2
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/rte-antares-rpackage/antaresProcessing
Licenses: GPL 3+
Synopsis: 'Antares' Results Processing
Description:

Process results generated by Antares', a powerful open source software developed by RTE (Réseau de Transport dâ à lectricité) to simulate and study electric power systems (more information about Antares here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>). This package provides functions to create new columns like net load, load factors, upward and downward margins or to compute aggregated statistics like economic surpluses of consumers, producers and sectors.

r-photobiologylamps 0.5.3
Propagated dependencies: r-photobiology@0.14.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://docs.r4photobiology.info/photobiologyLamps/
Licenses: GPL 2+
Synopsis: Spectral Irradiance Data for Lamps
Description:

Spectral emission data for some frequently used lamps including bulbs and flashlights based on led emitting diodes (LEDs) but excluding LEDs available as electronic components. Original spectral irradiance data for incandescent-, LED- and discharge lamps are included. They are complemented by data on the effect of temperature on the emission by fluorescent tubes. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

r-spatialcovariance 0.6-9
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spatialCovariance
Licenses: GPL 2+ GPL 3+
Synopsis: Computation of Spatial Covariance Matrices for Data on Rectangles
Description:

This package provides functions that compute the spatial covariance matrix for the matern and power classes of spatial models, for data that arise on rectangular units. This code can also be used for the change of support problem and for spatial data that arise on irregularly shaped regions like counties or zipcodes by laying a fine grid of rectangles and aggregating the integrals in a form of Riemann integration.

perl-crypt-rijndael 1.16
Channel: guix
Location: gnu/packages/perl.scm (gnu packages perl)
Home page: https://metacpan.org/release/Crypt-Rijndael
Licenses: GPL 3
Synopsis: Crypt::CBC compliant Rijndael encryption module
Description:

This module implements the Rijndael cipher which has been selected as the Advanced Encryption Standard. The keysize for Rijndael is 32 bytes. The blocksize is 16 bytes (128 bits). The supported encryption modes are:

  • MODE_CBC---Cipher Block Chaining

  • MODE_CFB---Cipher feedback

  • MODE_CTR---Counter mode

  • MODE_ECB---Electronic cookbook mode

  • MODE_OFB---Output feedback

r-lrcelltypemarkers 1.16.0
Propagated dependencies: r-experimenthub@2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/l.scm (guix-bioc packages l)
Home page: https://bioconductor.org/packages/LRcellTypeMarkers
Licenses: Expat
Synopsis: Marker gene information for LRcell R Bioconductor package
Description:

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

r-clustergeneration 1.3.8
Propagated dependencies: r-mass@7.3-65
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=clusterGeneration
Licenses: GPL 2+
Synopsis: Random cluster generation (with specified degree of separation)
Description:

The clusterGeneration package provides functions for generating random clusters, generating random covariance/correlation matrices, calculating a separation index (data and population version) for pairs of clusters or cluster distributions, and 1-D and 2-D projection plots to visualize clusters. The package also contains a function to generate random clusters based on factorial designs with factors such as degree of separation, number of clusters, number of variables, number of noisy variables.

r-regressionfactory 0.7.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RegressionFactory
Licenses: GPL 2+
Synopsis: Expander Functions for Generating Full Gradient and Hessian from Single-Slot and Multi-Slot Base Distributions
Description:

The expander functions rely on the mathematics developed for the Hessian-definiteness invariance theorem for linear projection transformations of variables, described in authors paper, to generate the full, high-dimensional gradient and Hessian from the lower-dimensional derivative objects. This greatly relieves the computational burden of generating the regression-function derivatives, which in turn can be fed into any optimization routine that utilizes such derivatives. The theorem guarantees that Hessian definiteness is preserved, meaning that reasoning about this property can be performed in the low-dimensional space of the base distribution. This is often a much easier task than its equivalent in the full, high-dimensional space. Definiteness of Hessian can be useful in selecting optimization/sampling algorithms such as Newton-Raphson optimization or its sampling equivalent, the Stochastic Newton Sampler. Finally, in addition to being a computational tool, the regression expansion framework is of conceptual value by offering new opportunities to generate novel regression problems.

r-msbackendmassbank 1.16.1
Propagated dependencies: r-spectra@1.18.2 r-s4vectors@0.46.0 r-protgenerics@1.40.0 r-mscoreutils@1.20.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biocparallel@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MsBackendMassbank
Licenses: Artistic License 2.0
Synopsis: Mass Spectrometry Data Backend for MassBank record Files
Description:

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

r-shinyquickstarter 2.0.1
Propagated dependencies: r-styler@1.10.3 r-stringr@1.5.1 r-stringi@1.8.7 r-shinywidgets@0.9.0 r-shinyjs@2.1.0 r-shinyfiles@0.9.3 r-shinydashboard@0.7.3 r-shinyalert@3.1.0 r-shiny@1.10.0 r-reshape2@1.4.4 r-plotly@4.10.4 r-miniui@0.1.2 r-ggplot2@3.5.2 r-fs@1.6.6 r-dplyr@1.1.4 r-data-table@1.17.4 r-colourpicker@1.3.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=ShinyQuickStarter
Licenses: GPL 3 FSDG-compatible
Synopsis: 'RStudio' Addin for Building Shiny Apps per Drag & Drop
Description:

This RStudio addin makes the creation of Shiny and ShinyDashboard apps more efficient. Besides the necessary folder structure, entire apps can be created using a drag and drop interface and customized with respect to a specific use case. The addin allows the export of the required user interface and server code at any time. By allowing the creation of modules, the addin can be used throughout the entire app development process.

r-transcriptogramer 1.30.0
Propagated dependencies: r-topgo@2.59.0 r-tidyr@1.3.1 r-snow@0.4-4 r-reder@3.4.0 r-progress@1.2.3 r-limma@3.64.1 r-igraph@2.1.4 r-ggplot2@3.5.2 r-foreach@1.5.2 r-dosnow@1.0.20 r-data-table@1.17.4 r-biomart@2.64.0
Channel: guix-bioc
Location: guix-bioc/packages/t.scm (guix-bioc packages t)
Home page: https://github.com/arthurvinx/transcriptogramer
Licenses: GPL 2+
Synopsis: Transcriptional analysis based on transcriptograms
Description:

R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expressions are altered.

r-blockwiseranktest 0.1.0
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://cran.r-project.org/package=BlockwiseRankTest
Licenses: GPL 2+
Synopsis: Block-Wise Rank in Similarity Graph Edge-Count Two-Sample Test (BRISE)
Description:

This package implements the Block-wise Rank in Similarity Graph Edge-count test (BRISE), a rank-based two-sample test designed for block-wise missing data. The method constructs (pattern) pair-wise similarity graphs and derives quadratic test statistics with asymptotic chi-square distribution or permutation-based p-values. It provides both vectorized and congregated versions for flexible inference. The methodology is described in Zhang, Liang, Maile, and Zhou (2025) <doi:10.48550/arXiv.2508.17411>.

r-conversationalign 0.3.2
Propagated dependencies: r-zoo@1.8-14 r-yrmisc@0.1.6 r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.2.1 r-textstem@0.1.4 r-stringr@1.5.1 r-stringi@1.8.7 r-rlang@1.1.6 r-purrr@1.0.4 r-magrittr@2.0.3 r-httr@1.4.7 r-dplyr@1.1.4 r-desctools@0.99.60
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Reilly-ConceptsCognitionLab/ConversationAlign
Licenses: LGPL 3+
Synopsis: Process Text and Compute Linguistic Alignment in Conversation Transcripts
Description:

Imports conversation transcripts into R, concatenates them into a single dataframe appending event identifiers, cleans and formats the text, then yokes user-specified psycholinguistic database values to each word. ConversationAlign then computes alignment indices between two interlocutors across each transcript for >40 possible semantic, lexical, and affective dimensions. In addition to alignment, ConversationAlign also produces a table of analytics (e.g., token count, type-token-ratio) in a summary table describing your particular text corpus.

r-future-batchtools 0.21.0
Propagated dependencies: r-stringi@1.8.7 r-parallelly@1.44.0 r-future@1.49.0 r-checkmate@2.3.2 r-batchtools@0.9.17
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://future.batchtools.futureverse.org
Licenses: LGPL 2.1+
Synopsis: Future API for Parallel and Distributed Processing using 'batchtools'
Description:

Implementation of the Future API <doi:10.32614/RJ-2021-048> on top of the batchtools package. This allows you to process futures, as defined by the future package, in parallel out of the box, not only on your local machine or ad-hoc cluster of machines, but also via high-performance compute ('HPC') job schedulers such as LSF', OpenLava', Slurm', SGE', and TORQUE / PBS', e.g. y <- future.apply::future_lapply(files, FUN = process)'.

r-treedimensiontest 0.0.2
Propagated dependencies: r-rdpack@2.6.4 r-rcpp@1.0.14 r-rcolorbrewer@1.1-3 r-nfactors@2.4.1.2 r-mlpack@4.6.3 r-igraph@2.1.4 r-fitdistrplus@1.2-2
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://cran.r-project.org/package=TreeDimensionTest
Licenses: LGPL 3+
Synopsis: Trajectory Presence and Heterogeneity in Multivariate Data
Description:

Testing for trajectory presence and heterogeneity on multivariate data. Two statistical methods (Tenha & Song 2022) <doi:10.1371/journal.pcbi.1009829> are implemented. The tree dimension test quantifies the statistical evidence for trajectory presence. The subset specificity measure summarizes pattern heterogeneity using the minimum subtree cover. There is no user tunable parameters for either method. Examples are included to illustrate how to use the methods on single-cell data for studying gene and pathway expression dynamics and pathway expression specificity.

r-featureterminator 1.0.0
Propagated dependencies: r-tibble@3.2.1 r-randomforest@4.7-1.2 r-lattice@0.22-7 r-ggplot2@3.5.2 r-e1071@1.7-16 r-dplyr@1.1.4 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=FeatureTerminatoR
Licenses: GPL 3
Synopsis: Feature Selection Engine to Remove Features with Minimal Predictive Power
Description:

The aim is to take in data.frame inputs and utilises methods, such as recursive feature engineering, to enable the features to be removed. What this does differently from the other packages, is that it gives you the choice to remove the variables manually, or it automated this process. Feature selection is a concept in machine learning, and statistical pipelines, whereby unimportant, or less predictive variables are eliminated from the analysis, see Boughaci (2018) <doi:10.1007/s40595-018-0107-y>.

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