This package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

This is a versioned snapshot of the files containing metadata about each known libretro core. The snapshot is taken from the libretro-super repository.

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

This package provides several methods to integrate functions over the unit sphere and ball in n-dimensional Euclidean space. Routines for converting to/from multivariate polar/spherical coordinates are also provided.

Expand region increases the selected region by semantic units. Just keep pressing the key until it selects what you want. There's also er/contract-region if you expand too far.

This package provides a utility function for Org buffers that makes a _SRC block with the appropriate language annotation for code that has been copied from an Emacs major mode.

Adjusts longitudinal regression models using Bayesian methodology for covariance structures of composite symmetry (SC), autoregressive ones of order 1 AR (1) and autoregressive moving average of order (1,1) ARMA (1,1).

This package provides a custom CSS/HTML or GIF/image file for the loading screen in R Shiny. It also can use the marquee to have a custom text loading screen.

The sexp_processor package is derived from ParseTree, but contrary to ParseTree, it includes all the generic S-exp processing tools. Amongst the included tools are Sexp, SexpProcessor and Environment

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

This package provides functions to perform statistical inference of data organized in contingency tables. This package is a companion to the "Statistical Analysis of Contingency Tables" book by Fagerland et al. <ISBN 9781466588172>.

Fit linear splines to species time series to detect population growth scenarios based on Hyndman, R J and Mesgaran, M B and Cousens, R D (2015) <doi:10.1007/s10530-015-0962-8>.

Randomizing exams with LaTeX'. If you can compile your main document with LaTeX', the program should be able to compile the randomized versions without much extra effort when creating the document.

This package provides tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.

Inference with control function methods for nonlinear outcome models when the model is known ('Guo and Small (2016) <arXiv:1602.01051>) and when unknown but semiparametric ('Li and Guo (2021) <arXiv:2010.09922>).

This package provides functionality for analytically calculating parameters (via the InteractionPoweR package) useful for simulation of moderated multiple regression, based on the correlations among the predictors and outcome and the reliability of predictors.

This package provides the ggplot binning layer stat_summaries_hex(), which functions similar to its singular form, but allows the use of multiple statistics per bin. Those statistics can be mapped to multiple bin aesthetics.

This package provides a set of predicates and assertions for checking the properties of strings. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

This package provides a set of predicates and assertions for checking the properties of numbers. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

This package (like luarandom, but without the obligation to use LuaLaTeX) provides some macros for creating random integer number lists. This list can have multiple numbers or not, and this list can be sorted or not.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MoGene-1\_0-st-v1\_probe\_tab.

Subset and download data from EU Copernicus Climate Data Service: <https://cds.climate.copernicus.eu/>. Import information about the Earth's past, present and future climate from Copernicus into R without the need of external software.