This package contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, Kullback-Leibler divergence, and generalized Simpson's indices. The estimators used have a bias that decays exponentially fast.

An S3 class groupedHyperframe that inherits from hyper data frame. Batch processes on point-pattern hyper column. Aggregation of function-value-table hyper column(s) and numeric hyper column(s) over a nested grouping structure.

Enforcement of field types in lists. A drop-in tool to allow for dynamic input data that might be questionably parsed or cast to be coerced into the specific desired format in a reasonably performant manner.

This package contains third-party map tile provider information from Leaflet.js, to be used with the leaflet R package. Additionally, leaflet.providers enables users to retrieve up-to-date provider information between package updates.

This package contains an administrative-level-1 map of the world. Administrative-level-1 is the generic term for the largest sub-national subdivision of a country. This package was created for use with the choroplethr package.

Here, a function has been developed to generate parameters of the input designs, as well as incidence matrices. This is a general function that can be used to investigate the characterization properties of any block design.

This package produces Labour Market Areas from commuting flows available at elementary territorial units. It provides tools for automatic tuning based on spatial contiguity. It also allows for statistical analyses and visualisation of the new functional geography.

Downloads and tidies the San Francisco Public Utilities Commission Beach Water Quality Monitoring Program data. Data sets can be downloaded per beach, or the raw data can be downloaded. See <https://sfwater.org/cfapps/lims/beachmain1.cfm>.

Uses logistic regression to model the probability of detection as a function of covariates. This model is then used with observational survey data to estimate population size, while accounting for uncertain detection. See Steinhorst and Samuel (1989).

Vignettes for the survival package. Split from the survival package since the vignettes were getting large. Also, since survival is a recommended package it cannot make use of other packages outside of base+recommended (e.g. rmarkdown').

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Routines for combining causal effect estimates and study diagnostics across multiple data sites in a distributed study, without sharing patient-level data. Allows for normal and non-normal approximations of the data-site likelihood of the effect parameter.

This package provides likelihood functions as defined by Fisher (1922) <doi:10.1098/rsta.1922.0009> and a function that creates likelihood functions from density functions. The functions are meant to aid in education of likelihood based methods.

Redis fixtures and fixture factories for Pytest. This is a pytest plugin, that enables you to test your code that relies on a running Redis database. It allows you to specify additional fixtures for Redis process and client.

This package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

enh-ruby-mode is a major mode providing syntax highlighting, navigation and indentation capabilities for editing Ruby source files. It parses the source files using Ruby's builtin Ripper class and performs syntax checks on them.

This package replaces \textsuperscript and \textsubscript commands by equivalent commands that use OpenType font features to access appropriate glyphs if possible. It also patches LaTeX's default footnote command to use this new \textsuperscript for footnote symbols.

This package provides a tool for calculating agreement interval of two measurement methods (Jason Liao (2015) <DOI:10.1515/ijb-2014-0030>) and present results in plots with discordance rate and/or clinically meaningful limit to quantify agreement quality.

Allows to view the optimal probability cut-off point at which the Sensitivity and Specificity meets and its a best way to minimize both Type-1 and Type-2 error for a binary Classifier in determining the Probability threshold.

An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.

RogueBox Adventures is a graphical roguelike with strong influences from sandbox games like Minecraft or Terraria. The main idea of RogueBox Adventures is to offer the player a kind of roguelike toy-world. This world can be explored and changed freely.

Images are provided as an array dataset of 2D image thumbnails from Google Image Search <https://www.google.com/search>. This array data may be suitable for a training data of machine learning or deep learning as a first trial.

These Bayesian models written in the Stan probabilistic language can be used to interpret green crab trapping and environmental DNA monitoring data, either independently or jointly. Detailed model information is found in Keller (2022) <doi:10.1002/eap.2561>.

This package provides a shiny application to assist in phytosanitary inspections. It generates a diagram of pallets in a lot, highlights the units to be sampled, and documents them based on the selected sampling method (simple random or systematic sampling).