The package will report number of used registers (counter, dimen, skip, muskip, box, token, input, output, math families, languages, insertions), and will compare the number to the maximum available number of such registers.

Utility functions for working with CONCH data, listing remote files. One function assigns HoverNet nuclei to ProvGigaPath tiles with a scale factor to align coordinates. Provides internal utility functions for imageFeatureTCGA and most functions are not meant for end users.

This package provides a tool to obtain activity counts, originally a translation of the python package agcounts <https://github.com/actigraph/agcounts>. This tool allows the processing of data from any accelerometer brand, with a more flexible approach to handle different sampling frequencies.

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the ImageJ Auto Threshold plugin functionality to R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.

This package provides function declarations and inline function definitions that facilitate communication between R and the Armadillo C++ library for linear algebra and scientific computing. This implementation is detailed in Vargas Sepulveda and Schneider Malamud (2024) <doi:10.1016/j.softx.2025.102087>.

This is the core functions needed by the tsmp package. The low level and carefully checked mathematical functions are here. These are implementations of the Matrix Profile concept that was created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.

This is a data-only package, containing data needed to run the CRAN package pathfindR', a package for enrichment analysis utilizing active subnetworks. This package contains protein-protein interaction network data, data related to gene sets and example input/output data.

This package provides tools for using the StreamCat and LakeCat API and interacting with the StreamCat and LakeCat database. Convenience functions in the package wrap the API for StreamCat on <https://api.epa.gov/StreamCat/streams/metrics>.

This package performs sensitivity analysis for Structural Equation Modeling (SEM). It determines which sample points need to be removed for the sign of a specific path in the SEM model to change, thus assessing the robustness of the model. Methodological manuscript in preparation.

Loads the 5 packages in the Tidy Consultant Universe. This collection of packages is useful for anyone doing data science, data analysis, or quantitative consulting. The functions in these packages range from data cleaning, data validation, data binning, statistical modeling, and file exporting.

This package provides a collection of color palettes that were extracted from various books on my sons(Wren) bookshelf. Also included are a number of functions and wrappers to utilize them, as well as to subset the palettes to desired number/specific colors.

The aim of SHAPforxgboost is to aid in visual data investigations using SHAP (Shapley additive explanation) visualization plots for XGBoost. It provides summary plot, dependence plot, interaction plot, and force plot. It relies on the XGBoost package to produce SHAP values.

recomplete is a completion library for quickly completing or correcting words in cases where the first candidate is the likely choice. Unlike most completion, it immediately performs the completion action, calling again to cycle over options. Completion candidates are displayed in the echo area.

Store University of Washington CADD v1.6 hg38 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg38 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.

Store University of Washington CADD v1.6 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.

This package provides an alternative to facilitate the construction of a phylogeny for fish species from a list of species or a community matrix using as a backbone the phylogenetic tree proposed by Rabosky et al. (2018) <doi:10.1038/s41586-018-0273-1>.

Adds support for the English language to the koRpus package. To ask for help, report bugs, suggest feature improvements, or discuss the global development of the package, please consider subscribing to the koRpus-dev mailing list (<https://korpusml.reaktanz.de>).

Import an XML document with nested object structures and convert it into a relational data model. The result is a set of R dataframes with foreign key relationships. The data model and the data can be exported as SQL code of different SQL flavors.

Turbo aims to be as fast as single-page web application without having to write any JavaScript. Turbo accelerates links and form submissions without requiring server-side changes to the generated HTML. It allows carving up a page into independent frames, which can be lazy-loaded and operated as independent components. Finally, it helps making partial page updates using just HTML and a set of CRUD-like container tags. These three techniques reduce the amount of custom JavaScript that many web applications need to write by an order of magnitude. And for the few dynamic bits that are left, Stimulus can be used.

CircSeqAlignTk is a toolkit for the analysis of RNA-Seq data derived from circular genome sequences, with a primary focus on viroids, circular RNAs typically consisting of a few hundred nucleotides. The toolkit supports an end-to-end analysis pipeline, from alignment to visualization.

Perform bootstrap-based hypothesis testing procedures on three statistical problems. In particular, it covers independence testing, testing the slope in a linear regression setting, and goodness-of-fit testing, following (Derumigny, Galanis, Schipper and Van der Vaart, 2025) <doi:10.48550/arXiv.2512.10546>.

This package provides methods for fitting mixture distributions to univariate data using expectation maximization, HWHM and other methods. Supports Gaussian, Cauchy, Student's t, skew-normal and von Mises mixtures. For more details see Merkys (2018) <https://www.lvb.lt/permalink/370LABT_NETWORK/1m6ui06/alma9910036312108451>.

Infer the genetic composition of individuals in terms of haplotype dosages for a haploblock, based on bi-allelic marker dosages, for any ploidy level. Reference: Voorrips and Tumino: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data. Submitted to BMC Bioinformatics (2021).

Data files and documentation for PEDiatric vALidation oF vAriableS in TBI (PEDALFAST). The data was used in "Functional Status Scale in Children With Traumatic Brain Injury: A Prospective Cohort Study" by Bennett, Dixon, et al (2016) <doi:10.1097/PCC.0000000000000934>.