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r-evaluationmeasures 1.1.0
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://cran.r-project.org/package=EvaluationMeasures
Licenses: GPL 2+ GPL 3+
Synopsis: Collection of Model Evaluation Measure Functions
Description:

This package provides Some of the most important evaluation measures for evaluating a model. Just by giving the real and predicted class, measures such as accuracy, sensitivity, specificity, ppv, npv, fmeasure, mcc and ... will be returned.

r-lindleypowerseries 1.0.1
Propagated dependencies: r-lamw@2.2.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LindleyPowerSeries
Licenses: GPL 2+
Synopsis: Lindley Power Series Distribution
Description:

Computes the probability density function, the cumulative distribution function, the hazard rate function, the quantile function and random generation for Lindley Power Series distributions, see Nadarajah and Si (2018) <doi:10.1007/s13171-018-0150-x>.

raspberrypi-userland 0.0.0-0.54fd97a
Channel: guix
Location: gnu/packages/raspberry-pi.scm (gnu packages raspberry-pi)
Home page: https://github.com/raspberrypi/userland/
Licenses: Modified BSD
Synopsis: Raspberry Pi GPU-related libraries
Description:

This package package contains libraries to interface to EGL, mmal, GLESv2, vcos, openmaxil, vchiq_arm, bcm_host, VFC and OpenVG. It also provides the dtmerge, dtoverlay, dtparam, raspivid and tvservice commands, among others.

r-faersquarterlydata 1.2.0
Propagated dependencies: r-xml2@1.3.8 r-tidyr@1.3.1 r-tibble@3.2.1 r-tableone@0.13.2 r-stringr@1.5.1 r-dplyr@1.1.4 r-data-table@1.17.4
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=faersquarterlydata
Licenses: GPL 3+
Synopsis: FDA Adverse Event Reporting System Quarterly Data Extracting Tool
Description:

An easy framework to read FDA Adverse Event Reporting System XML/ASCII files <https://www.fda.gov/drugs/questions-and-answers-fdas-adverse-event-reporting-system-faers/fda-adverse-event-reporting-system-faers-latest-quarterly-data-files>.

python-jwst-reffiles 1.0.1
Propagated dependencies: python-astropy@7.0.1 python-jwst@1.18.1 python-matplotlib@3.8.2 python-numpy@1.26.2 python-scipy@1.12.0
Channel: guix
Location: gnu/packages/astronomy.scm (gnu packages astronomy)
Home page: https://github.com/spacetelescope/jwst_reffiles
Licenses: Modified BSD
Synopsis: Tool for JWST's CRDS-formatted reference files creation
Description:

This package provides a tool to create Calibration References Data System-formatted reference files for James Webb Space Telescope from a set of input dark current files and a set of flat field files.

u-boot-rpi-4-32b-bin 2025.01
Dependencies: u-boot-rpi-4-32b@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

u-boot-rpi-3-32b-bin 2025.01
Dependencies: u-boot-rpi-3-32b@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

r-lumimouseidmapping 1.10.0
Propagated dependencies: r-lumi@2.60.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/l.scm (guix-bioc packages l)
Home page: https://bioconductor.org/packages/lumiMouseIDMapping
Licenses: FSDG-compatible
Synopsis: Illumina Identifier mapping for Mouse
Description:

This package includes mappings information between different types of Illumina IDs of Illumina Mouse chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Mouse chips to RefSeq IDs with mapping qualities information.

r-lumihumanidmapping 1.10.1
Propagated dependencies: r-lumi@2.60.0 r-dbi@1.2.3 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/l.scm (guix-bioc packages l)
Home page: https://bioconductor.org/packages/lumiHumanIDMapping
Licenses: FSDG-compatible
Synopsis: Illumina Identifier mapping for Human
Description:

This package includes mappings information between different types of Illumina IDs of Illumina Human chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Human chips to RefSeq IDs with mapping qualities information.

r-microbiomeprofiler 1.14.0
Propagated dependencies: r-yulab-utils@0.2.0 r-shinywidgets@0.9.0 r-shinycustomloader@0.9.0 r-shiny@1.10.0 r-magrittr@2.0.3 r-htmltools@0.5.8.1 r-gson@0.1.0 r-golem@0.5.1 r-ggplot2@3.5.2 r-enrichplot@1.28.2 r-dt@0.33 r-config@0.3.2 r-clusterprofiler@4.16.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/YuLab-SMU/MicrobiomeProfiler/
Licenses: GPL 2
Synopsis: An R/shiny package for microbiome functional enrichment analysis
Description:

This is an R/shiny package to perform functional enrichment analysis for microbiome data. This package was based on clusterProfiler. Moreover, MicrobiomeProfiler support KEGG enrichment analysis, COG enrichment analysis, Microbe-Disease association enrichment analysis, Metabo-Pathway analysis.

r-equalcompareimages 0.1.0
Propagated dependencies: r-zip@2.3.3 r-shinybusy@0.3.3 r-magick@2.8.6 r-knitr@1.50 r-ggplot2@3.5.2 r-cowplot@1.1.3
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://sites.google.com/view/equal-group/home
Licenses: GPL 3+
Synopsis: Comparison of Images for Researchers Without Coding Skills
Description:

Support functions for R-based "EQUALCompareImages - Compare similarity between and within images" shiny application which allow researchers without coding skills or expertise in image comparison algorithms to compare images. Gurusamy,K (2025)<doi:10.5281/zenodo.16994047>.

r-ontologysimilarity 2.7
Propagated dependencies: r-rcpp@1.0.14 r-ontologyindex@2.12
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ontologySimilarity
Licenses: GPL 2+
Synopsis: Calculating Ontological Similarities
Description:

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

r-rapidpolygonlookup 0.1.1
Propagated dependencies: r-sp@2.2-0 r-rgooglemaps@1.5.1 r-rann@2.6.2 r-pbsmapping@2.74.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RapidPolygonLookup
Licenses: GPL 2+ GPL 3+
Synopsis: POLYGON LOOKUP USING KD TREES
Description:

Facilitates efficient polygon search using kd trees. Coordinate level spatial data can be aggregated to higher geographical identities like census blocks, ZIP codes or police district boundaries. This process requires mapping each point in the given data set to a particular identity of the desired geographical hierarchy. Unless efficient data structures are used, this can be a daunting task. The operation point.in.polygon() from the package sp is computationally expensive. Here, we exploit kd-trees as efficient nearest neighbor search algorithm to dramatically reduce the effective number of polygons being searched.

r-replicationsuccess 1.3.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://crsuzh.github.io/ReplicationSuccess/
Licenses: GPL 2+
Synopsis: Design and Analysis of Replication Studies
Description:

This package provides utilities for the design and analysis of replication studies. Features both traditional methods based on statistical significance and more recent methods such as the sceptical p-value; Held L. (2020) <doi:10.1111/rssa.12493>, Held et al. (2022) <doi:10.1214/21-AOAS1502>, Micheloud et al. (2023) <doi:10.1111/stan.12312>. Also provides related methods including the harmonic mean chi-squared test; Held, L. (2020) <doi:10.1111/rssc.12410>, and intrinsic credibility; Held, L. (2019) <doi:10.1098/rsos.181534>. Contains datasets from five large-scale replication projects.

r-pharmaverseadamjnj 0.0.1
Propagated dependencies: r-pharmaverseadam@1.2.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=pharmaverseadamjnj
Licenses: FSDG-compatible
Synopsis: J&J Innovative Medicine ADaM Test Data
Description:

This package provides a set of Analysis Data Model (ADaM) datasets constructed by modifying the ADaM datasets in the pharmaverseadam package to meet J&J Innovative Medicine's standard data structure for Clinical and Statistical Programming.

julia-referencetests 0.9.7
Propagated dependencies: julia-deepdiffs@1.2.0 julia-distances@0.10.7 julia-fileio@1.9.1 julia-imagecore@0.9.4 julia-imageinterminal@0.4.7
Channel: guix
Location: gnu/packages/julia-xyz.scm (gnu packages julia-xyz)
Home page: https://juliatesting.github.io/ReferenceTests.jl/latest/
Licenses: Expat
Synopsis: Utility package for comparing data against reference files
Description:

ReferenceTests.jl is a Julia package that adds a couple of additional macros to your testing toolbox. In particular, it focuses on functionality for testing values against reference files, which in turn the package can help create and update if need be.

r-intamapinteractive 1.2-7
Propagated dependencies: r-spcosa@0.4-5 r-spatstat-geom@3.4-1 r-sp@2.2-0 r-sf@1.0-21 r-intamap@1.5-11 r-gstat@2.1-3 r-automap@1.1-16
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://cran.r-project.org/package=intamapInteractive
Licenses: GPL 2+
Synopsis: Interactive Add-on Functionality for 'intamap'
Description:

The methods in this package adds to the functionality of the intamap package, such as bias correction and network optimization. Pebesma et al (2010) gives an overview of the methods behind and possible usage <doi:10.1016/j.cageo.2010.03.019>.

r-runexampleswrapper 1.0
Propagated dependencies: r-devtools@2.4.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=runExamplesWrapper
Licenses: GPL 2+
Synopsis: Wrapper for 'run_examples()'
Description:

Captures errors encountered when running run_examples()', and processes and archives them. The function run_examples() within the devtools package allows batch execution of all of the examples within a given package. This is much more convenient than testing each example manually. However, a major inconvenience is that if an error is encountered, the program stops and does not complete testing the remaining examples. Also, there is not a systematic record of the results, namely which package functions had no examples, which had examples that failed, and which had examples that succeeded. The current package provides the missing functionality.

r-exploremodelmatrix 1.20.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-shinyjs@2.1.0 r-shinydashboard@0.7.3 r-shiny@1.10.0 r-scales@1.4.0 r-s4vectors@0.46.0 r-rintrojs@0.3.4 r-mass@7.3-65 r-magrittr@2.0.3 r-limma@3.64.1 r-ggplot2@3.5.2 r-dt@0.33 r-dplyr@1.1.4 r-cowplot@1.1.3
Channel: guix-bioc
Location: guix-bioc/packages/e.scm (guix-bioc packages e)
Home page: https://github.com/csoneson/ExploreModelMatrix
Licenses: Expat
Synopsis: Graphical Exploration of Design Matrices
Description:

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

r-quanteda-textplots 0.96
Propagated dependencies: r-stringi@1.8.7 r-sna@2.8 r-rcpp@1.0.14 r-rcolorbrewer@1.1-3 r-quanteda@4.3.0 r-network@1.19.0 r-matrix@1.7-3 r-igraph@2.1.4 r-ggrepel@0.9.6 r-ggplot2@3.5.2
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=quanteda.textplots
Licenses: GPL 3
Synopsis: Plots for the Quantitative Analysis of Textual Data
Description:

Plotting functions for visualising textual data. Extends quanteda and related packages with plot methods designed specifically for text data, textual statistics, and models fit to textual data. Plot types include word clouds, lexical dispersion plots, scaling plots, network visualisations, and word keyness plots.

r-timeseriesdatasets 0.1.0
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/lightbluetitan/timeseriesdatasets_R
Licenses: GPL 3
Synopsis: Time Series Data Sets
Description:

This package provides a diverse collection of time series datasets spanning various fields such as economics, finance, energy, healthcare, and more. Designed to support time series analysis in R by offering datasets from multiple disciplines, making it a valuable resource for researchers and analysts.

r-microbiomedatasets 1.16.0
Propagated dependencies: r-treesummarizedexperiment@2.16.1 r-summarizedexperiment@1.38.1 r-multiassayexperiment@1.34.0 r-experimenthub@2.16.0 r-biostrings@2.76.0 r-biocgenerics@0.54.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeDataSets
Licenses: CC0
Synopsis: Experiment Hub based microbiome datasets
Description:

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

java-marlin-renderer 0.9.4.8
Dependencies: java-hamcrest-core@1.3 java-junit@4.12
Channel: guix
Location: gnu/packages/java-graphics.scm (gnu packages java-graphics)
Home page: https://github.com/bourgesl/marlin-renderer/
Licenses: GPL 2
Synopsis: Rendering engine
Description:

Marlin is a Java2D RenderingEngine optimized for performance (improved memory usage and footprint, better multi-threading) and better visual quality based on OpenJDK's pisces implementation. It handles shape rendering (Graphics2D draw(Shape) / fill(Shape) with stroke and dash attributes.

u-boot-rpi-arm64-bin 2025.01
Dependencies: u-boot-rpi-arm64@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

This package only contains the file u-boot.bin.

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