CountDownLatch is a synchronization aid that allows one or more threads to wait until a set of operations being performed in other threads completes.

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

This package works analogous to BiocManager but for Docker images. Use the BiocDockerManager package to install and manage Docker images provided by the Bioconductor project.

Ruby Electric mode accelerates code writing in Ruby by making some keys electric and automatically supplying with closing parentheses and end as appropriate.

This package provides an OTP library to be used for CT log outputs you want to be readable around all that noise they contain.

File::Find::Rule is a friendlier interface to File::Find. It allows you to build rules which specify the desired files and directories.

This package provides a plugin for Pytest which adds the ability to retry flaky tests, thereby improving the consistency of the test suite results.

This package can speed up Test::Unit, RSpec, Cucumber, and Spinach tests by running them concurrently across multiple CPU cores.

Control your keyboard and mouse with R code by simulating key presses and mouse clicks. The input simulation is implemented with the Windows API.

This package provides SummarizedExperiment-like containers for storing and manipulating dimensionally-reduced assay data. The ReducedExperiment classes allow users to simultaneously manipulate their original dataset and their decomposed data, in addition to other method-specific outputs like feature loadings. Implements utilities and specialised classes for the application of stabilised independent component analysis (sICA) and weighted gene correlation network analysis (WGCNA).

This is a package to perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

This package provides high performance functions for row and column operations on sparse matrices. Currently, the optimizations are limited to data in the column sparse format.

This package provides a Mocha adapter for Bacon, allowing you to use the Mocha stubbing and mocking library with Bacon, a small RSpec clone.

Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data.

Allows identification of palettes derived from LTER (Long Term Ecological Research) photographs based on user criteria. Also facilitates extraction of palettes from users photos directly.

Calculate various indices, like Crude Migration Rate, different Gini indices or the Coefficient of Variation among others, to show the (un)equality of migration.

Simulates the extinction of species in ecological networks and it analyzes its cascading effects, described in Dunne et al. (2002) <doi:10.1073/pnas.192407699>.

This function fits a reversible jump Bayesian piecewise exponential model that also includes the intensity of each event considered along with the rate of events.

Rebecca Emacs theme is a dark theme with purple/violet colors, based on the Dracula theme for Emacs and the Gloom theme for Atom.

This library exports three symbols: with-raw-io, read-char, and read-line, to provide raw POSIX I/O in Common Lisp.

This package provides a Jekyll plugin to add metadata tags for search engines and social networks to better index and display your site's content.

This package implements full Bayesian analysis for calibrating mathematical models with new methodology for modeling the discrepancy function. It allows for emulation, calibration and prediction using complex mathematical model outputs and experimental data. See the reference: Mengyang Gu and Long Wang, 2018, Journal of Uncertainty Quantification; Mengyang Gu, Fangzheng Xie and Long Wang, 2022, Journal of Uncertainty Quantification; Mengyang Gu, Kyle Anderson and Erika McPhillips, 2023, Technometrics.

This package provides summarized MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

This package stores all schemas required by various alabaster.* packages. No computation should be performed by this package, as that is handled by alabaster.base.