Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Routines for combining causal effect estimates and study diagnostics across multiple data sites in a distributed study, without sharing patient-level data. Allows for normal and non-normal approximations of the data-site likelihood of the effect parameter.

This package provides likelihood functions as defined by Fisher (1922) <doi:10.1098/rsta.1922.0009> and a function that creates likelihood functions from density functions. The functions are meant to aid in education of likelihood based methods.

Redis fixtures and fixture factories for Pytest. This is a pytest plugin, that enables you to test your code that relies on a running Redis database. It allows you to specify additional fixtures for Redis process and client.

This package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

enh-ruby-mode is a major mode providing syntax highlighting, navigation and indentation capabilities for editing Ruby source files. It parses the source files using Ruby's builtin Ripper class and performs syntax checks on them.

This package replaces \textsuperscript and \textsubscript commands by equivalent commands that use OpenType font features to access appropriate glyphs if possible. It also patches LaTeX's default footnote command to use this new \textsuperscript for footnote symbols.

This package provides a tool for calculating agreement interval of two measurement methods (Jason Liao (2015) <DOI:10.1515/ijb-2014-0030>) and present results in plots with discordance rate and/or clinically meaningful limit to quantify agreement quality.

Allows to view the optimal probability cut-off point at which the Sensitivity and Specificity meets and its a best way to minimize both Type-1 and Type-2 error for a binary Classifier in determining the Probability threshold.

An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.

This package provides a set of udev rules to specify the proper privileges for flashing QMK compatible devices without needing root. The rules require the group plugdev to be added to each user that needs this.

RogueBox Adventures is a graphical roguelike with strong influences from sandbox games like Minecraft or Terraria. The main idea of RogueBox Adventures is to offer the player a kind of roguelike toy-world. This world can be explored and changed freely.

Images are provided as an array dataset of 2D image thumbnails from Google Image Search <https://www.google.com/search>. This array data may be suitable for a training data of machine learning or deep learning as a first trial.

These Bayesian models written in the Stan probabilistic language can be used to interpret green crab trapping and environmental DNA monitoring data, either independently or jointly. Detailed model information is found in Keller (2022) <doi:10.1002/eap.2561>.

This package provides a shiny application to assist in phytosanitary inspections. It generates a diagram of pallets in a lot, highlights the units to be sampled, and documents them based on the selected sampling method (simple random or systematic sampling).

This package provides a set of predicates and assertions for checking the properties of US-specific complex data types. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

This package provides a set of predicates and assertions for checking the properties of UK-specific complex data types. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

Edit an Antares simulation before running it : create new areas, links, thermal clusters or binding constraints or edit existing ones. Update Antares general & optimization settings. Antares is an open source power system generator, more information available here : <https://antares-simulator.org/>.

Clique percolation community detection for weighted and unweighted networks as well as threshold and plotting functions. For more information see Farkas et al. (2007) <doi:10.1088/1367-2630/9/6/180> and Palla et al. (2005) <doi:10.1038/nature03607>.

Network-centric framework for integrative analysis of high-throughput gene expression data using user-supplied gene-gene interaction graphs. Constructs seed-centered multi-generation networks constrained by expression correlations and simulates expression perturbation scenarios via regression-based prediction (van Dam, 2018).

minitest-focus gives the ability focus on a few tests with ease without having to use command-line arguments. It introduces a focus class method for use in testing classes, specifying that the next defined test is to be run.

The WWW::RobotRules module parses /robots.txt files as specified in "A Standard for Robot Exclusion", at <http://www.robotstxt.org/wc/norobots.html>. Webmasters can use the /robots.txt file to forbid conforming robots from accessing parts of their web site.

This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.

Statistical functions used in the French HydroPortail <https://hydro.eaufrance.fr/>. This includes functions to estimate distributions, quantile curves and uncertainties, along with various other utilities. Technical details are available (in French) in Renard (2016) <https://hal.inrae.fr/hal-02605318>.