RNA-seq count data from Pickrell et al. (2010) employed to illustrate the use of the Poisson-Tweedie family of distributions with the tweeDEseq package.

This package provides capabilities to process Apache HTTPD Log files.The main functionalities are to extract data from access and error log files to data frames.

This package contains data and code to accompany the book P. Zuccolotto and M. Manisera (2020) Basketball Data Science. Applications with R. CRC Press. ISBN 9781138600799.

This gem generates a treemap showing the complexity of Ruby code on which it is run. It uses Saikuro under the covers to analyze Ruby code complexity.

Antwrap is a Ruby module that wraps the Apache Ant build tool. Antwrap can be used to invoke Ant tasks from a Ruby or a JRuby script.

This package provides a data-driven projection-based method for estimating changepoints in high-dimensional time series. Multiple changepoints are estimated using a (wild) binary segmentation scheme.

Export Rcmdr output to LaTeX or HTML code. The plug-in was originally intended to facilitate exporting Rcmdr output to formats other than ASCII text and to provide R novices with an easy-to-use, easy-to-access reference on exporting R objects to formats suited for printed output. The package documentation contains several pointers on creating reports, either by using conventional word processors or LaTeX/LyX.

Uses data and constants to calculate potential evapotranspiration (PET) and actual evapotranspiration (AET) from 21 different formulations including Penman, Penman-Monteith FAO 56, Priestley-Taylor and Morton formulations.

R Commander plug-in for repeated-measures and mixed-design ('split-plot') ANOVA. It adds a new menu entry for repeated measures that allows to deal with up to three within-subject factors and optionally with one or several between-subject factors. It also provides supplementary options to oneWayAnova() and multiWayAnova() functions, such as choice of ANOVA type, display of effect sizes and post hoc analysis for multiWayAnova().

ValueSemantics generates modules that provide conventional value semantics for a given set of attributes. The behaviour is similar to an immutable Struct class, plus extensible, lightweight validation and coercion.

Annotation package for the implementation of the frozen Robust Multiarray Analysis procedure for Arabidopsis thaliana. This package was generated on the basis of frmaTools version 1.52.0.

To visualize the execution data of the processes on BPMN (Business Process Model and Notation) diagrams, using overlays, style customization and interactions, with the bpmn-visualization TypeScript library.

Collection of tutorials for working with Positron'. Covers scripts, Quarto documents, Git', GitHub', and Quarto websites. Makes extensive use of the tools in the tutorial.helpers package.

Import maps can import JavaScript modules using logical names that map to versioned/digested files -- directly from the browser. It makes it possible to build modern JavaScript applications using JavaScript libraries made for ES modules (ESM) without the need for transpiling or bundling, which removes the need for Webpack, Yarn, npm, or any other part of the JavaScript toolchain. All that is needed is the asset pipeline that is already included in Rails.

Flat Remix GTK is a GTK application theme inspired by material design. It is mostly flat using a colorful palette with some shadows, highlights, and gradients for some depth.

This library provides a generic OAuth2 strategy for OmniAuth. It doesn't provide a way to gather user information, so should be used as a building block for authentication strategies.

Add and modify small charts on an interactive map created with package leaflet'. These charts can be used to represent at same time multiple variables on a single map.

This package provides methods to integrate functions over m-dimensional simplices in n-dimensional Euclidean space. There are exact methods for polynomials and adaptive methods for integrating an arbitrary function.

ReadyMedia (formerly known as MiniDLNA) is a simple media server that serves multimedia content to compatible clients on the network. It aims to be fully compliant with DLNA and UPnP-AV standards.

This package provides a new clustering algorithm, binary cut, for clustering similarity matrices of functional terms is implemented in this package. It also provides functionalities for visualizing, summarizing and comparing the clusterings.

CL-random-forest is an implementation of Random Forest for multiclass classification and univariate regression written in Common Lisp. It also includes an implementation of Global Refinement of Random Forest.

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

This package provides functions for calculating and analyzing the proliferative index (PI) from an RNA-seq dataset. As described in Ramaker & Lasseigne, et al. bioRxiv, 2016 <doi:10.1101/063057>.

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".