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This package provides functions to conduct hypothesis tests and derive confidence intervals for quantiles, linear combinations of quantiles, ratios of dependent linear combinations and differences and ratios of all of the above for comparisons between independent samples. Additionally, quantile-based measures of inequality are also considered.
This package provides functions to perform propensity score matching on rolling entry interventions for which a suitable "entry" date is not observed for nonparticipants. For more details, please reference Witman et al. (2018) <doi:10.1111/1475-6773.13086>.
Partitions the phenotypic variance of a plastic trait, studied through its reaction norm. The variance partition distinguishes between the variance arising from the average shape of the reaction norms (V_Plas) and the (additive) genetic variance . The latter is itself separated into an environment-blind component (V_G/V_A) and the component arising from plasticity (V_GxE/V_AxE). The package also provides a way to further partition V_Plas into aspects (slope/curvature) of the shape of the average reaction norm (pi-decomposition) and partition V_Add (gamma-decomposition) and V_AxE (iota-decomposition) into the impact of genetic variation in the reaction norm parameters. Reference: de Villemereuil & Chevin (2025) <doi:10.32942/X2NC8B>.
This package provides the user with functions to develop their trading strategy, uncover actionable trading ideas, and monitor consensus shifts with crowdsourced earnings and economic estimate data directly from <www.estimize.com>. Further information regarding the web services this package invokes can be found at <www.estimize.com/api>.
An implementation of Bayesian model-averaged t-tests that allows users to draw inferences about the presence versus absence of an effect, variance heterogeneity, and potential outliers. The RoBTT package estimates ensembles of models created by combining competing hypotheses and applies Bayesian model averaging using posterior model probabilities. Users can obtain model-averaged posterior distributions and inclusion Bayes factors, accounting for uncertainty in the data-generating process (Maier et al., 2024, <doi:10.3758/s13423-024-02590-5>). The package also provides a truncated likelihood version of the model-averaged t-test, enabling users to exclude potential outliers without introducing bias (Godmann et al., 2024, <doi:10.31234/osf.io/j9f3s>). Users can specify a wide range of informative priors for all parameters of interest. The package offers convenient functions for summary, visualization, and fit diagnostics.
Seamless extraction of river networks from digital elevation models data. The package allows analysis of digital elevation models that can be either externally provided or downloaded from open source repositories (thus interfacing with the elevatr package). Extraction is performed via the D8 flow direction algorithm of TauDEM (Terrain Analysis Using Digital Elevation Models), thus interfacing with the traudem package. Resulting river networks are compatible with functions from the OCNet package. See Carraro (2023) <doi:10.5194/hess-27-3733-2023> for a presentation of the package.
Understanding heterogeneous causal effects based on pretreatment covariates is a crucial step in modern empirical work in data science. Building on the recent developments in Calonico et al (2025) <https://rdpackages.github.io/references/Calonico-Cattaneo-Farrell-Palomba-Titiunik_2025_HTERD.pdf>, this package provides tools for estimation and inference of heterogeneous treatment effects in Regression Discontinuity (RD) Designs. The package includes two main commands: rdhte to conduct estimation and robust bias-corrected inference for conditional RD treatment effects (given choice of bandwidth parameter); rdbwhte', which implements automatic bandwidth selection methods; and rdhte_lincom to test linear combinations of parameters.
Allows users to import data files containing heartbeat positions in the most broadly used formats, to remove outliers or points with unacceptable physiological values present in the time series, to plot HRV data, and to perform time domain, frequency domain and nonlinear HRV analysis. See Garcia et al. (2017) <DOI:10.1007/978-3-319-65355-6>.
Makes it easy to produce everyday ggplot2 charts in a functional way without an extensive "tree" implementation. The package includes over 15 functions for the production and arrangement of basic graphing.
Compiles C++ code using Rcpp <doi:10.18637/jss.v040.i08>, Eigen <doi:10.18637/jss.v052.i05> and CppAD to produce first and second order partial derivatives. Also provides an implementation of Faa di Bruno's formula to combine the partial derivatives of composed functions.
Defines functions that can be used to collect provenance as an R script executes or during a console session. The output is a text file in PROV-JSON format.
This package performs two-sample comparisons using the restricted mean survival time (RMST) when survival curves end at different time points between groups. This package implements a sensitivity approach that allows the threshold timepoint tau to be specified after the longest survival time in the shorter survival group. Two kinds of between-group contrast estimators (the difference in RMST and the ratio of RMST) are computed: Uno et al(2014)<doi:10.1200/JCO.2014.55.2208>, Uno et al(2022)<https://CRAN.R-project.org/package=survRM2>, Ueno and Morita(2023)<doi:10.1007/s43441-022-00484-z>.
Computes confidence intervals for nonlinear functions of model parameters (e.g., product of k coefficients) in single-level and multilevel structural equation models. Methods include the distribution of the product, Monte Carlo simulation, and bootstrap methods. It also performs the Model-Based Constrained Optimization (MBCO) procedure for hypothesis testing of indirect effects. References: Tofighi, D., and MacKinnon, D. P. (2011). RMediation: An R package for mediation analysis confidence intervals. Behavior Research Methods, 43, 692-700. <doi:10.3758/s13428-011-0076-x>; Tofighi, D., and Kelley, K. (2020). Improved inference in mediation analysis: Introducing the model-based constrained optimization procedure. Psychological Methods, 25(4), 496-515. <doi:10.1037/met0000259>; Tofighi, D. (2020). Bootstrap Model-Based Constrained Optimization Tests of Indirect Effects. Frontiers in Psychology, 10, 2989. <doi:10.3389/fpsyg.2019.02989>.
The output gap indicates the percentage difference between the actual output of an economy and its potential. Since potential output is a latent process, the estimation of the output gap poses a challenge and numerous filtering techniques have been proposed. RGAP facilitates the estimation of a Cobb-Douglas production function type output gap, as suggested by the European Commission (Havik et al. 2014) <https://ideas.repec.org/p/euf/ecopap/0535.html>. To that end, the non-accelerating wage rate of unemployment (NAWRU) and the trend of total factor productivity (TFP) can be estimated in two bivariate unobserved component models by means of Kalman filtering and smoothing. RGAP features a flexible modeling framework for the appropriate state-space models and offers frequentist as well as Bayesian estimation techniques. Additional functionalities include direct access to the AMECO <https://economy-finance.ec.europa.eu/economic-research-and-databases/economic-databases/ameco-database_en> database and automated model selection procedures. See the paper by Streicher (2022) <http://hdl.handle.net/20.500.11850/552089> for details.
This package provides an R interface to the NiftyReg image registration tools <https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration are supported, in two and three dimensions.
The complete data set of open repair data, full compliant with the Open Repair Data Standards (ORDS). It combines the datasets contributed by partner organizations of the Open Repair Alliance (ORA). Last updated: 2021-02-22. The package also contains via quests enriched datasets on batteries, printer, mobiles, and tablets.
Enhances the R Optimization Infrastructure ('ROI') package with the optimx package.
This package provides a checkbox group input for usage in a Shiny application. The checkbox group has a head checkbox allowing to check or uncheck all the checkboxes in the group. The checkboxes are customizable.
This holds r markdown and quarto templates for academic papers and slide decks. It also has templates to create research projects which contain academic papers as vignettes.
Graphical visualization of the birds molt to facilitate the creation of molting graph for passerines having 9 (Rmolt(data,9)) or 10 primaries (Rmolt(data,10)), and also only for the 10 first primaries (Rmolt(data,"10_0")).
Resource Selection (Probability) Functions for use-availability wildlife data based on weighted distributions as described in Lele and Keim (2006) <doi:10.1890/0012-9658(2006)87%5B3021:WDAEOR%5D2.0.CO;2>, Lele (2009) <doi:10.2193/2007-535>, and Solymos & Lele (2016) <doi:10.1111/2041-210X.12432>.
We provide a variety of algorithms for manifold-valued data, including Fréchet summaries, hypothesis testing, clustering, visualization, and other learning tasks. See Bhattacharya and Bhattacharya (2012) <doi:10.1017/CBO9781139094764> for general exposition to statistics on manifolds.
Focused on (but not exclusive to) data sets hosted on PhysioNet (<https://physionet.org>), ricu provides utilities for download, setup and access of intensive care unit (ICU) data sets. In addition to functions for running arbitrary queries against available data sets, a system for defining clinical concepts and encoding their representations in tabular ICU data is presented.
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