This package provides processed and raw count data for single-cell RNA sequencing. In addition, this package offers single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

The document class cjs-rcs-article and its companion bibliographic styles cjs-rcs-en and cjs-rcs-fr typeset manuscripts immediately in accordance with the presentation rules of The Canadian Journal of Statistics.

Cox model inference for relative hazard and covariate-specific pure risk estimated from stratified and unstratified case-cohort data as described in Etievant, L., Gail, M.H. (Lifetime Data Analysis, 2024) <doi:10.1007/s10985-024-09621-2>.

This package provides a browser extension that redirects sites to their privacy friendly alternative frontends. It's possible to toggle all redirects on and off and the extension will default to using random instances if none are selected.

This package provides Elm programs with reliable, powerful tools for formatting dates and times. It uses Elm's type system instead of format strings, which makes formatting code more readable and can catch some errors at compile time.

This is a package for the analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

An implementation of the Unsupervised Smooth Contour Detection algorithm for digital images as described in the paper: "Unsupervised Smooth Contour Detection" by Rafael Grompone von Gioi, and Gregory Randall (2016). The algorithm is explained at <doi:10.5201/ipol.2016.175>.

run.Group is a universal mechanism to manage goroutine lifecycles, written to manage component lifecycles in func main for OK Log. It's useful in any circumstance where you need to orchestrate multiple goroutines as a unit whole.

Apache Maven is a software project management and comprehension tool. This package contains the Maven Artifact classes, providing the Artifact interface, with its DefaultArtifact implementation. The jar file is executable and provides a little tool to display how Maven parses and compares versions:

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

This package provides user-friendly tools for creating and customizing clinical trial reports. By leveraging the teal framework, this package provides teal modules to easily create an interactive panel that allows for seamless adjustments to data presentation, thereby streamlining the creation of detailed and accurate reports.

This package implements the Brakerski-Fan-Vercauteren (BFV, 2012) <https://eprint.iacr.org/2012/144>, Brakerski-Gentry-Vaikuntanathan (BGV, 2014) <doi:10.1145/2633600>, and Cheon-Kim-Kim-Song (CKKS, 2016) <https://eprint.iacr.org/2016/421.pdf> schema for Fully Homomorphic Encryption. The included vignettes demonstrate the encryption procedures.

This library enables path variables in networking routes when using Hunchenissr for Common Lisp. If a part of the path (between two slashes) starts with a question mark (?), that symbol (without question mark) will be bound to whatever value was in the same place in the URL (as a string).

An implementation for using efficient initials to compute the maximal eigenpair in R. It provides three algorithms to find the efficient initials under two cases: the tridiagonal matrix case and the general matrix case. Besides, it also provides two algorithms for the next to the maximal eigenpair under these two cases.

Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Get ENCODE data of enhancer region via H3K4me1 peaks and search homolog regions for given sequences. The candidates of enhancer homolog regions can be filtered by distance to target TSS. The top candidates from human and mouse will be aligned to each other and then exported as multiple alignments with given enhancer.

Selenium implements the W3C WebDriver protocol to automate popular browsers. It aims to mimic the behaviour of a real user as it interacts with the application's HTML. It's primarily intended for web application testing, but any web-based task can be automated. This package provides the Ruby bindings of Selenium.

tidySpatialExperiment provides a bridge between the SpatialExperiment package and the tidyverse ecosystem. It creates an invisible layer that allows you to interact with a SpatialExperiment object as if it were a tibble; enabling the use of functions from dplyr, tidyr, ggplot2 and plotly. But, underneath, your data remains a SpatialExperiment object.

This package provides raw data objects to be used for blood cell proportion estimation in minfi and similar packages. The FlowSorted.Blood.EPIC object is based in samples assayed by Brock Christensen and colleagues; for details see Salas et al. 2018. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.

Combining P-values from multiple statistical tests is common in bioinformatics. However, this procedure is non-trivial for dependent P-values. This package implements an empirical adaptation of Brown’s Method (an extension of Fisher’s Method) for combining dependent P-values which is appropriate for highly correlated data sets found in high-throughput biological experiments.

This package provides a splittable PRNG functions like a PRNG that can be used as a stream of random values; it can also be split to produce a second, independent stream of random values.

This library implements a splittable pseudo-random number generator that sacrifices cryptographic-quality randomness in favor of performance.

Allows you to retrieve information from the Google Knowledge Graph API <https://www.google.com/intl/bn/insidesearch/features/search/knowledge.html> and process it in R in various forms. The Knowledge Graph Search API lets you find entities in the Google Knowledge Graph'. The API uses standard schema.org types and is compliant with the JSON-LD specification.

This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m.

This package provides a novel method for interpreting new transcriptomic datasets through near-instantaneous comparison to public archives without high-performance computing requirements. Through the pre-computed index, users can identify public resources associated with their dataset such as gene sets, MeSH term, and publication. Functions to identify interpretable annotations and intuitive visualization options are implemented in this package.