_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-spechelpers 0.3.2
Propagated dependencies: r-splancs@2.01-45 r-gsubfn@0.7
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/bryanhanson/SpecHelpers
Licenses: GPL 3
Build system: r
Synopsis: Spectroscopy Related Utilities
Description:

Utility functions for spectroscopy. 1. Functions to simulate spectra for use in teaching or testing. 2. Functions to process files created by LoggerPro and SpectraSuite software.

r-scan 0.67.0
Propagated dependencies: r-rstudioapi@0.17.1 r-readxl@1.4.5 r-nlme@3.1-168 r-miniui@0.1.2 r-mcmcglmm@2.36 r-mblm@0.12.1 r-magrittr@2.0.4 r-knitr@1.50 r-kableextra@1.4.0 r-gt@1.3.0 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/jazznbass/scan/
Licenses: GPL 3+
Build system: r
Synopsis: Single-Case Data Analyses for Single and Multiple Baseline Designs
Description:

This package provides a collection of procedures for analysing, visualising, and managing single-case data. These include regression models (multilevel, multivariate, bayesian), between case standardised mean difference, overlap indices ('PND', PEM', PAND', PET', tau-u', IRD', baseline corrected tau', CDC'), and randomization tests. Data preparation functions support outlier detection, handling missing values, scaling, and custom transformations. An export function helps to generate html, word, and latex tables in a publication friendly style. A shiny app allows to use scan in a graphical user interface. More details can be found in the online book Analyzing single-case data with R and scan', Juergen Wilbert (2025) <https://jazznbass.github.io/scan-Book/>.

r-spant 3.8.0
Propagated dependencies: r-stringr@1.6.0 r-signal@1.8-1 r-rniftyreg@2.8.4 r-rnifti@1.8.0 r-ptw@1.9-16 r-pracma@2.4.6 r-plyr@1.8.9 r-pbapply@1.7-4 r-numderiv@2016.8-1.1 r-nloptr@2.2.1 r-mmand@1.6.3 r-minpack-lm@1.2-4 r-jsonlite@2.0.0 r-irlba@2.3.5.1 r-fields@17.1 r-expm@1.0-0 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://spantdoc.wilsonlab.co.uk/
Licenses: GPL 3
Build system: r
Synopsis: MR Spectroscopy Analysis Tools
Description:

This package provides tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. The package includes methods for spectral fitting: Wilson (2021) <DOI:10.1002/mrm.28385>, Wilson (2025) <DOI:10.1002/mrm.30462> and spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.

r-sightabilitymodel 1.5.5
Propagated dependencies: r-survey@4.4-8 r-plyr@1.8.9 r-mvtnorm@1.3-3 r-msm@1.8.2 r-matrix@1.7-4 r-formula-tools@1.7.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/jfieberg/SightabilityModel
Licenses: GPL 2
Build system: r
Synopsis: Wildlife Sightability Modeling
Description:

Uses logistic regression to model the probability of detection as a function of covariates. This model is then used with observational survey data to estimate population size, while accounting for uncertain detection. See Steinhorst and Samuel (1989).

r-spfa 1.0
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spfa
Licenses: Expat
Build system: r
Synopsis: Semi-Parametric Factor Analysis
Description:

Estimation, scoring, and plotting functions for the semi-parametric factor model proposed by Liu & Wang (2022) <doi:10.1007/s11336-021-09832-8> and Liu & Wang (2023) <arXiv:2303.10079>. Both the conditional densities of observed responses given the latent factors and the joint density of latent factors are estimated non-parametrically. Functional parameters are approximated by smoothing splines, whose coefficients are estimated by penalized maximum likelihood using an expectation-maximization (EM) algorithm. E- and M-steps can be parallelized on multi-thread computing platforms that support OpenMP'. Both continuous and unordered categorical response variables are supported.

r-shinytime 1.0.3
Propagated dependencies: r-shiny@1.11.1 r-htmltools@0.5.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://burgerga.github.io/shinyTime/
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Time Input Widget for Shiny
Description:

This package provides a time input widget for Shiny. This widget allows intuitive time input in the [hh]:[mm]:[ss] or [hh]:[mm] (24H) format by using a separate numeric input for each time component. The interface with R uses date-time objects. See the project page for more information and examples.

r-snsmart 0.2.4
Propagated dependencies: r-truncdist@1.0-2 r-tidyr@1.3.1 r-rjags@4-17 r-pracma@2.4.6 r-hdinterval@0.2.4 r-geepack@1.3.13 r-envstats@3.1.0 r-cubature@2.1.4-1 r-condmvnorm@2025.1 r-bayestestr@0.17.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/sidiwang/snSMART
Licenses: GPL 2+
Build system: r
Synopsis: Small N Sequential Multiple Assignment Randomized Trial Methods
Description:

Consolidated data simulation, sample size calculation and analysis functions for several snSMART (small sample sequential, multiple assignment, randomized trial) designs under one library. See Wei, B., Braun, T.M., Tamura, R.N. and Kidwell, K.M. "A Bayesian analysis of small n sequential multiple assignment randomized trials (snSMARTs)." (2018) Statistics in medicine, 37(26), pp.3723-3732 <doi:10.1002/sim.7900>.

r-selectspm 0.7
Propagated dependencies: r-spatstat-random@3.4-3 r-spatstat-model@3.5-0 r-spatstat-geom@3.6-1 r-spatstat-explore@3.6-0 r-spatstat@3.4-1 r-ecespa@1.1-18
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=selectspm
Licenses: GPL 2+
Build system: r
Synopsis: Select Point Pattern Models Based on Minimum Contrast, AIC and Goodness of Fit
Description:

Fit and selects point pattern models based on minimum contrast, AIC and and goodness of fit.

r-semnar 0.8.2
Propagated dependencies: r-urlshortener@2.0.0 r-parsedate@1.3.2 r-lubridate@1.9.4 r-leaflet@2.2.3 r-jsonlite@2.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=semnar
Licenses: GPL 3
Build system: r
Synopsis: Constructing and Interacting with Databases of Presentations
Description:

This package provides methods for constructing and maintaining a database of presentations in R. The presentations are either ones that the user gives or gave or presentations at a particular event or event series. The package also provides a plot method for the interactive mapping of the presentations using leaflet by grouping them according to country, city, year and other presentation attributes. The markers on the map come with popups providing presentation details (title, institution, event, links to materials and events, and so on).

r-snreg 1.2.0
Propagated dependencies: r-npsf@0.8.0 r-formula@1.2-5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://olegbadunenko.github.io/snreg/
Licenses: GPL 3
Build system: r
Synopsis: Regression with Skew-Normally Distributed Error Term
Description:

Models with skewâ normally distributed and thus asymmetric error terms, implementing the methods developed in Badunenko and Henderson (2023) "Production analysis with asymmetric noise" <doi:10.1007/s11123-023-00680-5>. The package provides tools to estimate regression models with skewâ normal error terms, allowing both the variance and skewness parameters to be heteroskedastic. It also includes a stochastic frontier framework that accommodates both i.i.d. and heteroskedastic inefficiency terms.

r-schemr 0.3.1
Propagated dependencies: r-stringr@1.6.0 r-purrr@1.2.0 r-openimager@1.3.0 r-magrittr@2.0.4 r-dplyr@1.1.4 r-apcluster@1.4.14
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/stuart-morrison/schemr
Licenses: GPL 3
Build system: r
Synopsis: Convert Images to Usable Color Schemes
Description:

This package provides a fast and adaptable tool to convert photos and images into usable colour schemes for data visualisation. Contains functionality to extract colour palettes from images, as well for the conversion of images between colour spaces.

r-surveyvoi 1.1.1
Dependencies: mpfr@4.2.2 jags@4.3.1 gmp@6.3.0 fftw@3.3.10 automake@1.17 autoconf@2.69
Propagated dependencies: r-xgboost@1.7.11.1 r-withr@3.0.2 r-vegan@2.7-2 r-tibble@3.3.0 r-sf@1.0-23 r-scales@1.4.0 r-rsymphony@0.1-33 r-rcppeigen@0.3.4.0.2 r-rcppalgos@2.9.3 r-rcpp@1.1.0 r-progress@1.2.3 r-poissonbinomial@1.2.7 r-plyr@1.8.9 r-nloptr@2.2.1 r-matrix@1.7-4 r-groupdata2@2.0.5 r-dplyr@1.1.4 r-doparallel@1.0.17 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://prioritizr.github.io/surveyvoi/
Licenses: GPL 3
Build system: r
Synopsis: Survey Value of Information
Description:

Decision support tool for prioritizing sites for ecological surveys based on their potential to improve plans for conserving biodiversity (e.g. plans for establishing protected areas). Given a set of sites that could potentially be acquired for conservation management, it can be used to generate and evaluate plans for surveying additional sites. Specifically, plans for ecological surveys can be generated using various conventional approaches (e.g. maximizing expected species richness, geographic coverage, diversity of sampled environmental algorithms. After generating such survey plans, they can be evaluated using conditions) and maximizing value of information. Please note that several functions depend on the Gurobi optimization software (available from <https://www.gurobi.com>). Additionally, the JAGS software (available from <https://mcmc-jags.sourceforge.io/>) is required to fit hierarchical generalized linear models. For further details, see Hanson et al. (2023) <doi:10.1111/1365-2664.14309>.

r-svyvarsel 1.0.1
Propagated dependencies: r-survey@4.4-8 r-glmnet@4.1-10
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=svyVarSel
Licenses: GPL 3+
Build system: r
Synopsis: Variable Selection for Complex Survey Data
Description:

Fit design-based linear and logistic elastic nets with complex survey data considering the sampling design when defining training and test sets using replicate weights. Methods implemented in this package are described in: A. Iparragirre, T. Lumley, I. Barrio, I. Arostegui (2024) <doi:10.1002/sta4.578>.

r-scoring 0.6
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=scoring
Licenses: GPL 2
Build system: r
Synopsis: Proper Scoring Rules
Description:

Evaluating probabilistic forecasts via proper scoring rules. scoring implements the beta, power, and pseudospherical families of proper scoring rules, along with ordered versions of the latter two families. Included among these families are popular rules like the Brier (quadratic) score, logarithmic score, and spherical score. For two-alternative forecasts, also includes functionality for plotting scores that one would obtain under specific scoring rules.

r-subgrpid 0.12
Propagated dependencies: r-survival@3.8-3 r-rpart@4.1.24 r-matrix@1.7-4 r-mass@7.3-65 r-glmnet@4.1-10 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SubgrpID
Licenses: GPL 2+
Build system: r
Synopsis: Patient Subgroup Identification for Clinical Drug Development
Description:

Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.

r-sparsio 1.0.1
Propagated dependencies: r-rcpp@1.1.0 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/dselivanov/sparsio
Licenses: GPL 2+ FSDG-compatible
Build system: r
Synopsis: I/O Operations with Sparse Matrices
Description:

Fast SVMlight reader and writer. SVMlight is most commonly used format for storing sparse matrices (possibly with some target variable) on disk. For additional information about SVMlight format see <http://svmlight.joachims.org/>.

r-srscore 0.1.2
Propagated dependencies: r-tidyr@1.3.1 r-rlang@1.1.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SRscore
Licenses: Expat
Build system: r
Synopsis: Simple Transcriptome Meta-Analysis for Identifying Stress-Responsive Genes
Description:

Stress Response score (SRscore) is a stress responsiveness measure for transcriptome datasets and is based on the vote-counting method. The SRscore is determined to evaluate and score genes on the basis of the consistency of the direction of their regulation (Up-regulation, Down-regulation, or No change) under stress conditions across multiple analyzed research projects. This package is based on the HN-score (score based on the ratio of gene expression between hypoxic and normoxic conditions) proposed by Tamura and Bono (2022) <doi:10.3390/life12071079>, and can calculate both the original method and an extended calculation method described in Fukuda et al. (2025) <doi:10.1093/plphys/kiaf105>.

r-squat 0.5.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-scales@1.4.0 r-roahd@1.4.3 r-rlang@1.1.6 r-rcppeigen@0.3.4.0.2 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-progressr@0.18.0 r-mfpca@1.3-11 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-future-apply@1.20.0 r-fundata@1.3-9 r-fdasrvf@2.4.2 r-fdacluster@0.4.2 r-dtw@1.23-1 r-dbscan@1.2.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/LMJL-Alea/squat
Licenses: GPL 3+
Build system: r
Synopsis: Statistics for Quaternion Temporal Data
Description:

An implementation of statistical tools for the analysis of rotation-valued time series and functional data. It relies on pre-existing quaternion data structure provided by the Eigen C++ library.

r-sgdgmf 1.0.1
Propagated dependencies: r-viridislite@0.4.2 r-suppdists@1.1-9.9 r-rspectra@0.16-2 r-reshape2@1.4.5 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-mass@7.3-65 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-generics@0.1.4 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/CristianCastiglione/sgdGMF
Licenses: Expat
Build system: r
Synopsis: Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent
Description:

Efficient framework to estimate high-dimensional generalized matrix factorization models using penalized maximum likelihood under a dispersion exponential family specification. Either deterministic and stochastic methods are implemented for the numerical maximization. In particular, the package implements the stochastic gradient descent algorithm with a block-wise mini-batch strategy to speed up the computations and an efficient adaptive learning rate schedule to stabilize the convergence. All the theoretical details can be found in Castiglione et al. (2024, <doi:10.48550/arXiv.2412.20509>). Other methods considered for the optimization are the alternated iterative re-weighted least squares and the quasi-Newton method with diagonal approximation of the Fisher information matrix discussed in Kidzinski et al. (2022, <http://jmlr.org/papers/v23/20-1104.html>).

r-sadeg 1.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SADEG
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Stability Analysis in Differentially Expressed Genes
Description:

We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequences. Besides, in a variety of different organisms unequal use of synonymous codons, or codon usage bias, occurs which also show variation among genes in the same genome. Seemingly, codon usage bias is affected by both selective constraints and mutation bias which allows and enables us to examine and detect changes in these two evolutionary forces between genomes or along one genome. Therefore, we determined the codon adaptation index (CAI), effective number of codons (ENC) and codon usage analysis with calculation of the relative synonymous codon usage (RSCU), and subsequently predicted the translation efficiency and accuracy through GC-rich codon usages. Furthermore, we estimated the relative stability of the DNA sequence following calculation of the average free energy (Delta G) and Dimer base-stacking energy level.

r-smile 1.1.0
Dependencies: proj@9.3.1 geos@3.12.1 gdal@3.8.2
Propagated dependencies: r-sf@1.0-23 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-numderiv@2016.8-1.1 r-mvtnorm@1.3-3 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://lcgodoy.me/smile/
Licenses: GPL 3
Build system: r
Synopsis: Spatial Misalignment: Interpolation, Linkage, and Estimation
Description:

This package provides functions to estimate, predict and interpolate areal data. For estimation and prediction we assume areal data is an average of an underlying continuous spatial process as in Moraga et al. (2017) <doi:10.1016/j.spasta.2017.04.006>, Johnson et al. (2020) <doi:10.1186/s12942-020-00200-w>, and Wilson and Wakefield (2020) <doi:10.1093/biostatistics/kxy041>. The interpolation methodology is (mostly) based on Goodchild and Lam (1980, ISSN:01652273).

r-sisireg 1.2.1
Propagated dependencies: r-zoo@1.8-14 r-reticulate@1.44.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sisireg
Licenses: GPL 2+
Build system: r
Synopsis: Sign-Simplicity-Regression-Solver
Description:

Implementation of the SSR-Algorithm. The Sign-Simplicity-Regression model is a nonparametric statistical model which is based on residual signs and simplicity assumptions on the regression function. Goal is to calculate the most parsimonious regression function satisfying the statistical adequacy requirements. Theory and functions are specified in Metzner (2020, ISBN: 979-8-68239-420-3, "Trendbasierte Prognostik") and Metzner (2021, ISBN: 979-8-59347-027-0, "Adäquates Maschinelles Lernen").

r-springsteen 0.1.0
Propagated dependencies: r-rlang@1.1.6 r-devtools@2.4.6
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/obrienjoey/spRingsteen
Licenses: CC0
Build system: r
Synopsis: All Things Data and Springsteen
Description:

An R data package containing setlists from all Bruce Springsteen concerts over 1973-2021. Also includes all his song details such as lyrics and albums. Data extracted from: <http://brucebase.wikidot.com/>.

r-sqlhelper 0.2.1
Propagated dependencies: r-yaml@2.3.10 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-sf@1.0-23 r-rlang@1.1.6 r-rappdirs@0.3.3 r-purrr@1.2.0 r-pool@1.0.4 r-glue@1.8.0 r-dbi@1.2.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://majerr.github.io/sqlhelper/dev/
Licenses: GPL 3+
Build system: r
Synopsis: Easier 'SQL' Integration
Description:

Execute files of SQL and manage database connections. SQL statements and queries may be interpolated with string literals. Execution of individual statements and queries may be controlled with keywords. Multiple connections may be defined with YAML and accessed by name.

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Total results: 68658