Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.

MooseX::Role::WithOverloading allows you to write a Moose::Role which defines overloaded operators and allows those overload methods to be composed into the classes/roles/instances it's compiled to, where plain Moose::Roles would lose the overloading.

Full genome sequences for Chlamydomonas reinhardtii (v5.6) as provided by JGI and stored in Biostrings objects. The data in this package is public. See citation("BSgenome.Creinhardtii.JGI.v5.6") for how to cite in publications.

DataDriver is a data-driven extension for Robot Framework. DataDriver uses the Listener Interface of Robot Framework to create new test cases based on a data file that contains the test data. DataDriver supports data files in the CSV, XLS or XLSX formats.

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).

This Data package contains data objcets relevanat for the SingleMoleculeFootprinting package. More specifically, it contains one example of aligned sequencing data (.bam & .bai) necessary to run the SingleMoleculeFootprinting vignette. Additionally, we provide data that are essential for some functions to work correctly such as BaitCapture() and SampleCorrelation().

SSHLibrary is a Robot Framework library providing support for SSH and SFTP. It has the following main usages:

• Executing commands on the remote machine, either blocking or non-blocking.

• Writing and reading in an interactive shell.

• Transferring files and directories over SFTP.

• Ensuring that files and directories exist on the remote machine.

Dispatch type managing path-matching behaviour using regexes. Regex dispatch types have been deprecated and removed from Catalyst core. It is recommend that you use Chained methods or other techniques instead. As part of the refactoring, the dispatch priority of Regex vs Regexp vs LocalRegex vs LocalRegexp may have changed. Priority is now influenced by when the dispatch type is first seen in your application.

This package provides a function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

This package provides analysis results and trial simulation functions for the I-SPY Acute Respiratory Disease Syndrome trial based on composite ranked outcomes. The composite ranked outcome is a hierarchical outcome where trial participants are ranked first by 28 day mortality, then ventilator days, then by advanced respiratory support days. A Bayesian win probability approach is used for analysis. Trial design options include group sequential looks for safety, superiority, futility, and adjustment of randomization probabilities.

The resolver class implements the full semantics of OASIS Technical Resolution 9401:1997 (Amendment 2 to TR 9401) catalogs and the 06 Aug 2001 Committee Specification of OASIS XML Catalogs.

It also includes a framework of classes designed to read catalog files in a number of formats:

• The plain-text flavor described by TR9401.

• The XCatalog XML format defined by John Cowan

• The XML Catalog format defined by the OASIS Entity Resolution Technical Committee.

This package provides an API for interacting with repositories of RDF data.

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects.

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects.

Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac10, Feb. 2019) and stored in Biostrings objects.

Simple request logging in Go

Documentation at https://melpa.org/#/message-attachment-reminder

This package provides a CSS parser and inliner.

Check if the race detector is running.

Bitfields for structs that allow for modular use of enums.

This package contains a collection of web utilities.

This package contains a collection of web utilities.

Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster) assembled using data from public repositories.

Unicode transliterator in Golang - Replaces non-ASCII characters with their ASCII approximations.