Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) assembled using data from public repositories.

PWMEnrich pre-compiled background objects for M.musculus (mouse) and MotifDb M. musculus motifs.

This Common Lisp library provides reader macros for concise expression of function partial application and composition.

StackTrace is a Robot Framework listener that prints a stack trace directly to the terminal to ease debugging.

This package exposes a C elegans annotation database generated from UCSC by exposing these as TxDb objects.

renameio Go package provides a way to atomically create or replace a file or symbolic link.

This library provides a reflect api for Go programs without the runtime cost of the standard library reflect.Value.

Package redact provides facilities for separating safe and unsafe pieces of data when logging and constructing error object.

Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr11, Feb. 2017) and stored in Biostrings objects.

Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac3, Mar. 2009) and stored in Biostrings objects.

The Account Tax Rule Country Tryton module extends the tax rule to add origin and destination countries and subdivisions as criteria.

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects.

Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac4, May 2020) and wrapped in a BSgenome object.

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.

Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.

Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.

This package implements a functionality for consuming the runc binary in Go applications. It tries to expose all the settings and features of the runc CLI.

MooseX::Role::WithOverloading allows you to write a Moose::Role which defines overloaded operators and allows those overload methods to be composed into the classes/roles/instances it's compiled to, where plain Moose::Roles would lose the overloading.

Full genome sequences for Chlamydomonas reinhardtii (v5.6) as provided by JGI and stored in Biostrings objects. The data in this package is public. See citation("BSgenome.Creinhardtii.JGI.v5.6") for how to cite in publications.

DataDriver is a data-driven extension for Robot Framework. DataDriver uses the Listener Interface of Robot Framework to create new test cases based on a data file that contains the test data. DataDriver supports data files in the CSV, XLS or XLSX formats.

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).

This Data package contains data objcets relevanat for the SingleMoleculeFootprinting package. More specifically, it contains one example of aligned sequencing data (.bam & .bai) necessary to run the SingleMoleculeFootprinting vignette. Additionally, we provide data that are essential for some functions to work correctly such as BaitCapture() and SampleCorrelation().

SSHLibrary is a Robot Framework library providing support for SSH and SFTP. It has the following main usages:

• Executing commands on the remote machine, either blocking or non-blocking.

• Writing and reading in an interactive shell.

• Transferring files and directories over SFTP.

• Ensuring that files and directories exist on the remote machine.

Dispatch type managing path-matching behaviour using regexes. Regex dispatch types have been deprecated and removed from Catalyst core. It is recommend that you use Chained methods or other techniques instead. As part of the refactoring, the dispatch priority of Regex vs Regexp vs LocalRegex vs LocalRegexp may have changed. Priority is now influenced by when the dispatch type is first seen in your application.