_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-spatialbss 0.16-0
Propagated dependencies: r-spatialnp@1.1-6 r-sp@2.2-0 r-robustbase@0.99-6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-jade@2.0-4 r-distances@0.1.13
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SpatialBSS
Licenses: GPL 2+
Build system: r
Synopsis: Blind Source Separation for Multivariate Spatial Data
Description:

Blind source separation for multivariate spatial data based on simultaneous/joint diagonalization of (robust) local covariance matrices. This package is an implementation of the methods described in Bachoc, Genton, Nordhausen, Ruiz-Gazen and Virta (2020) <doi:10.1093/biomet/asz079>.

r-sphericalcubature 1.5
Propagated dependencies: r-simplicialcubature@1.3 r-mvmesh@1.6 r-cubature@2.1.4-1 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SphericalCubature
Licenses: GPL 2+
Build system: r
Synopsis: Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates
Description:

This package provides several methods to integrate functions over the unit sphere and ball in n-dimensional Euclidean space. Routines for converting to/from multivariate polar/spherical coordinates are also provided.

r-sphereoptimize 0.1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SphereOptimize
Licenses: GPL 3
Build system: r
Synopsis: Optimization on a Unit Sphere
Description:

This package provides a simple tool for numerical optimization on the unit sphere. This is achieved by combining the spherical coordinating system with L-BFGS-B optimization. This algorithm is implemented in Kolkiewicz, A., Rice, G., & Xie, Y. (2020) <doi:10.1016/j.jspi.2020.07.001>.

r-sbde 1.0-2
Propagated dependencies: r-extremefit@1.1.0 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sbde
Licenses: GPL 2
Build system: r
Synopsis: Semiparametric Bayesian Density Estimation
Description:

Offers Bayesian semiparametric density estimation and tail-index estimation for heavy tailed data, by using a parametric, tail-respecting transformation of the data to the unit interval and then modeling the transformed data with a purely nonparametric logistic Gaussian process density prior. Based on Tokdar et al. (2022) <doi:10.1080/01621459.2022.2104727>.

r-spectrino 2.0.0
Propagated dependencies: r-jsonlite@2.0.0 r-httpuv@1.6.16
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://www.spectrino.com
Licenses: GPL 2+
Build system: r
Synopsis: Spectra Viewer, Organizer, Data Preparation and Property Blocks
Description:

Spectra viewer, organizer, data preparation and property blocks from within R or stand-alone. Binary (application) part is installed separately using spnInstallApp() from spectrino package.

r-survextrap 1.0.1
Propagated dependencies: r-tibble@3.3.0 r-survival@3.8-3 r-stanheaders@2.32.10 r-splines2@0.5.4 r-rstan@2.32.7 r-rcppparallel@5.1.11-1 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-posterior@1.6.1 r-loo@2.8.0 r-gridextra@2.3 r-ggplot2@4.0.1 r-bh@1.87.0-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/chjackson/survextrap
Licenses: GPL 3+
Build system: r
Synopsis: Bayesian Flexible Parametric Survival Modelling and Extrapolation
Description:

Survival analysis using a flexible Bayesian model for individual-level right-censored data, optionally combined with aggregate data on counts of survivors in different periods of time. An M-spline is used to describe the hazard function, with a prior on the coefficients that controls over-fitting. Proportional hazards or flexible non-proportional hazards models can be used to relate survival to predictors. Additive hazards (relative survival) models, waning treatment effects, and mixture cure models are also supported. Priors can be customised and calibrated to substantive beliefs. Posterior distributions are estimated using Stan', and outputs are arranged in a tidy format. See Jackson (2023) <doi:10.1186/s12874-023-02094-1>.

r-spgwr 0.6-37
Propagated dependencies: r-spdata@2.3.4 r-sp@2.2-0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/rsbivand/spgwr/
Licenses: GPL 2+
Build system: r
Synopsis: Geographically Weighted Regression
Description:

This package provides functions for computing geographically weighted regressions are provided, based on work by Chris Brunsdon, Martin Charlton and Stewart Fotheringham.

r-secrdesign 2.10.1
Propagated dependencies: r-sf@1.0-23 r-secr@5.4.2 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-kofnga@1.3 r-bh@1.87.0-1 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://www.otago.ac.nz/density/
Licenses: GPL 2+
Build system: r
Synopsis: Sampling Design for Spatially Explicit Capture-Recapture
Description:

This package provides tools for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package secr'. Extensions in version 2.5.0 include costing and evaluation of detector spacing.

r-surrogateseq 1.1
Propagated dependencies: r-mass@7.3-65 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SurrogateSeq
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Group Sequential Testing of a Treatment Effect Using a Surrogate Marker
Description:

This package provides functions to implement group sequential procedures that allow for early stopping to declare efficacy using a surrogate marker and the possibility of futility stopping. More details are available in: Parast, L. and Bartroff, J (2024) <doi:10.1093/biomtc/ujae108>. A tutorial for this package can be found at <https://www.laylaparast.com/surrogateseq>. A Shiny App implementing the methods can be found at <https://parastlab.shinyapps.io/SurrogateSeqApp/>.

r-shinytempsignal 0.0.8
Propagated dependencies: r-yulab-utils@0.2.1 r-treeio@1.34.0 r-shinywidgets@0.9.0 r-shinyjs@2.1.0 r-shinydashboard@0.7.3 r-shiny@1.11.1 r-nlme@3.1-168 r-golem@0.5.1 r-ggtree@4.0.1 r-ggprism@1.0.7 r-ggpmisc@0.6.2 r-ggplot2@4.0.1 r-forecast@8.24.0 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/YuLab-SMU/shinyTempSignal
Licenses: GPL 3
Build system: r
Synopsis: Explore Temporal and Other Phylogenetic Signals
Description:

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

r-skfcpd 0.2.4
Propagated dependencies: r-rlang@1.1.6 r-reshape2@1.4.5 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-fastgasp@0.6.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SKFCPD
Licenses: GPL 3+
Build system: r
Synopsis: Fast Online Changepoint Detection for Temporally Correlated Data
Description:

Sequential Kalman filter for scalable online changepoint detection by temporally correlated data. It enables fast single and multiple change points with missing values. See the reference: Hanmo Li, Yuedong Wang, Mengyang Gu (2023), <arXiv:2310.18611>.

r-spatpca 1.3.8
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://egpivo.github.io/SpatPCA/
Licenses: GPL 2+
Build system: r
Synopsis: Regularized Principal Component Analysis for Spatial Data
Description:

Provide regularized principal component analysis incorporating smoothness, sparseness and orthogonality of eigen-functions by using the alternating direction method of multipliers algorithm (Wang and Huang, 2017, <DOI:10.1080/10618600.2016.1157483>). The method can be applied to either regularly or irregularly spaced data, including 1D, 2D, and 3D.

r-sqlserverconnect 0.1.0
Propagated dependencies: r-pool@1.0.4 r-odbc@1.6.4.1 r-dbi@1.2.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sqlserverconnect
Licenses: Expat
Build system: r
Synopsis: Simple Helpers for Connecting to 'SQL Server'
Description:

Lightweight helpers for connecting to Microsoft SQL Server using DBI', odbc', and pool'. Provides simple wrappers for building connection arguments, establishing connections, and safely disconnecting.

r-siland 3.0.2
Propagated dependencies: r-sp@2.2-0 r-sf@1.0-23 r-reshape2@1.4.5 r-raster@3.6-32 r-lme4@1.1-37 r-ggplot2@4.0.1 r-ggforce@0.5.0 r-fields@17.1 r-fasterize@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=siland
Licenses: GPL 2+ FSDG-compatible
Build system: r
Synopsis: Spatial Influence of Landscape
Description:

Method to estimate the spatial influence scales of landscape variables on a response variable. The method is based on Chandler and Hepinstall-Cymerman (2016) Estimating the spatial scales of landscape effects on abundance, Landscape ecology, 31: 1383-1394, <doi:10.1007/s10980-016-0380-z>.

r-sptimer 3.3.3
Propagated dependencies: r-spacetime@1.3-3 r-sp@2.2-0 r-extradistr@1.10.0 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spTimer
Licenses: GPL 2+
Build system: r
Synopsis: Spatio-Temporal Bayesian Modelling
Description:

Fits, spatially predicts and temporally forecasts large amounts of space-time data using [1] Bayesian Gaussian Process (GP) Models, [2] Bayesian Auto-Regressive (AR) Models, and [3] Bayesian Gaussian Predictive Processes (GPP) based AR Models for spatio-temporal big-n problems. Bakar and Sahu (2015) <doi:10.18637/jss.v063.i15>.

r-secret 1.1.0
Propagated dependencies: r-rprojroot@2.1.1 r-openssl@2.3.4 r-jsonlite@2.0.0 r-curl@7.0.0 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/gaborcsardi/secret#readme
Licenses: Expat
Build system: r
Synopsis: Share Sensitive Information in R Packages
Description:

Allow sharing sensitive information, for example passwords, API keys, etc., in R packages, using public key cryptography.

r-smof 1.2.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=smof
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Scoring Methodology for Ordered Factors
Description:

Starting from a given object representing a fitted model (within a certain set of model classes) whose (non-)linear predictor includes some ordered factor(s) among the explanatory variables, a new model is constructed and fitted where each named factor is replaced by a single numeric score, suitably chosen so that the new variable produces a fit comparable with the standard methodology based on a set of polynomial contrasts. Two variants of the present approach have been developed, one in each of the next references: Azzalini (2023) <doi:10.1002/sta4.624>, (2024) <doi:10.48550/arXiv.2406.15933>.

r-snowdata 1.0.0
Propagated dependencies: r-terra@1.8-86
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SnowData
Licenses: GPL 3
Build system: r
Synopsis: Historical Data from John Snow's 1854 Cholera Outbreak Map
Description:

This package provides historical datasets related to John Snow's 1854 cholera outbreak study in London. Includes data on cholera cases, water pump locations, and the street layout, enabling analysis and visualisation of the outbreak.

r-species 1.2.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SPECIES
Licenses: GPL 2
Build system: r
Synopsis: Statistical Package for Species Richness Estimation
Description:

Implementation of various methods in estimation of species richness or diversity in Wang (2011)<doi:10.18637/jss.v040.i09>.

r-smm 1.0.2
Propagated dependencies: r-seqinr@4.2-36 r-discreteweibull@1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SMM
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models
Description:

This package performs parametric and non-parametric estimation and simulation for multi-state discrete-time semi-Markov processes. For the parametric estimation, several discrete distributions are considered for the sojourn times: Uniform, Geometric, Poisson, Discrete Weibull and Negative Binomial. The non-parametric estimation concerns the sojourn time distributions, where no assumptions are done on the shape of distributions. Moreover, the estimation can be done on the basis of one or several sample paths, with or without censoring at the beginning or/and at the end of the sample paths. The implemented methods are described in Barbu, V.S., Limnios, N. (2008) <doi:10.1007/978-0-387-73173-5>, Barbu, V.S., Limnios, N. (2008) <doi:10.1080/10485250701261913> and Trevezas, S., Limnios, N. (2011) <doi:10.1080/10485252.2011.555543>. Estimation and simulation of discrete-time k-th order Markov chains are also considered.

r-startr 3.0.0
Propagated dependencies: r-stringr@1.6.0 r-s2dv@2.2.1 r-multiapply@2.1.5 r-future@1.68.0 r-easyncdf@0.1.4 r-climprojdiags@0.3.5 r-bigmemory@4.6.4 r-abind@1.4-8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://earth.bsc.es/gitlab/es/startR/
Licenses: GPL 3
Build system: r
Synopsis: Automatically Retrieve Multidimensional Distributed Data Sets
Description:

Automatically fetch, transform and arrange subsets of multidimensional data sets (collections of files) stored in local and/or remote file systems or servers, using multicore capabilities where possible. This tool provides an interface to perceive a collection of data sets as a single large multidimensional data array, and enables the user to request for automatic retrieval, processing and arrangement of subsets of the large array. Wrapper functions to add support for custom file formats can be plugged in/out, making the tool suitable for any research field where large multidimensional data sets are involved.

r-slopes 1.0.1
Propagated dependencies: r-sf@1.0-23 r-raster@3.6-32 r-pbapply@1.7-4 r-geodist@0.1.1 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ropensci/slopes/
Licenses: GPL 3
Build system: r
Synopsis: Calculate Slopes of Roads, Rivers and Trajectories
Description:

Calculates the slope (longitudinal gradient or steepness) of linear geographic features such as roads (for more details, see Ariza-López et al. (2019) <doi:10.1038/s41597-019-0147-x>) and rivers (for more details, see Cohen et al. (2018) <doi:10.1016/j.jhydrol.2018.06.066>). It can use local Digital Elevation Model (DEM) data or download DEM data via the ceramic package. The package also provides functions to add elevation data to linestrings and visualize elevation profiles.

r-sphereplot 1.5.1
Propagated dependencies: r-rgl@1.3.31
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sphereplot
Licenses: GPL 2
Build system: r
Synopsis: Spherical Plotting
Description:

Various functions for creating spherical coordinate system plots via extensions to rgl.

r-starvars 1.1.11
Propagated dependencies: r-zoo@1.8-14 r-xts@0.14.1 r-vars@1.6-1 r-quantmod@0.4.28 r-optimparallel@1.0-2 r-matrixcalc@1.0-6 r-mass@7.3-65 r-lessr@4.5.2 r-ks@1.15.1 r-foreach@1.5.2 r-dosnow@1.0.20
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/andbucci/starvars
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Vector Logistic Smooth Transition Models Estimation and Prediction
Description:

Allows the user to estimate a vector logistic smooth transition autoregressive model via maximum log-likelihood or nonlinear least squares. It further permits to test for linearity in the multivariate framework against a vector logistic smooth transition autoregressive model with a single transition variable. The estimation method is discussed in Terasvirta and Yang (2014, <doi:10.1108/S0731-9053(2013)0000031008>). Also, realized covariances can be constructed from stock market prices or returns, as explained in Andersen et al. (2001, <doi:10.1016/S0304-405X(01)00055-1>).

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