This package provides a tiny mid-level library that provides platform-specific standard locations of directories for config, cache and other data on Linux, Windows and macOS by leveraging the mechanisms defined by the XDG base/user directory specifications on Linux, the Known Folder API on Windows, and the Standard Directory guidelines on macOS.

This package provides a tiny mid-level library that provides platform-specific standard locations of directories for config, cache and other data on Linux, Windows and macOS by leveraging the mechanisms defined by the XDG base/user directory specifications on Linux, the Known Folder API on Windows, and the Standard Directory guidelines on macOS.

This package provides a tiny mid-level library that provides platform-specific standard locations of directories for config, cache and other data on Linux, Windows and macOS by leveraging the mechanisms defined by the XDG base/user directory specifications on Linux, the Known Folder API on Windows, and the Standard Directory guidelines on macOS.

Text::Hyphen is a Ruby library to hyphenate words in various languages using Ruby-fied versions of TeX hyphenation patterns. It will properly hyphenate various words according to the rules of the language the word is written in. The algorithm is based on that of the TeX typesetting system by Donald E. Knuth.

The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.

Evaluates the stability and significance of clusters on igraph graphs. Supports weighted and unweighted graphs. Implements the cluster evaluation methods defined by Arratia A, Renedo M (2021) <doi:10.7717/peerj-cs.600>. Also includes an implementation of the Reduced Mutual Information introduced by Newman et al. (2020) <doi:10.1103/PhysRevE.101.042304>.

Fits disaggregation regression models using TMB ('Template Model Builder'). When the response data are aggregated to polygon level but the predictor variables are at a higher resolution, these models can be useful. Regression models with spatial random fields. The package is described in detail in Nandi et al. (2023) <doi:10.18637/jss.v106.i11>.

The leaflet JavaScript library provides many plugins some of which are available in the core leaflet package, but there are many more. It is not possible to support them all in the core leaflet package. This package serves as an add-on to the leaflet package by providing extra functionality via leaflet plugins.

TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.

Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.

This package provides a minor mode for interacting with a Julia REPL running inside Emacs. The julia process is started in an ANSI terminal (term), which allows text formatting and colors, and interaction with the help system and the debugger. It is recommended that you use this minor mode with the package emacs-julia-mode.

The rotpages package allows you to format documents where small sets of pages are rotated by 180 degrees and rearranged, so that they can be read by turning the printed copy upside-down. It was developed for collecting exercises and solutions: using the package, you can print the exercise text normally and the solutions rotated.

Tools, methods and processes for the management of analysis workflows. These lightweight solutions facilitate structuring R&D activities. These solutions were developed to comply with Good Documentation Practice (GDP), with ALCOA+ principles as proposed by the U.S. FDA, and with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.

This package provides functions to calculate power and sample size for testing (1) mediation effects; (2) the slope in a simple linear regression; (3) odds ratio in a simple logistic regression; (4) mean change for longitudinal study with 2 time points; (5) interaction effect in 2-way ANOVA; and (6) the slope in a simple Poisson regression.

Soil health assessment builds information to improve decision in soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO <https://www.fao.org/land-water/databases-and-software/crop-information/en/>], groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>], carbon sequestration, irrigation potential, and status of soil resources.

Store persistent and synchronized data from shiny inputs within the browser. Refresh shiny applications and preserve user-inputs over multiple sessions. A database-like storage format is implemented using Dexie.js <https://dexie.org>, a minimal wrapper for IndexedDB'. Transfer browser link parameters to shiny input or output values. Store app visitor views, likes and followers.

Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.