Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.

This package implements a functionality to perform efficient file copies using reflink operations on compatible filesystems such as btrfs and xfs.

Full genome sequences for Pan paniscus (Bonobo) as provided by UCSC (panPan1, May 2012) and stored in Biostrings objects.

Full genome sequences for Pan paniscus (Bonobo) as provided by UCSC (panPan2, Dec. 2015) and stored in Biostrings objects.

This package provides full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in Biostrings objects.

This package provides an implementation of RDF4J's SAIL API, which stores data on disk in various formats.

Full genome sequences for Macaca fascicularis (long-tailed macaque) as provided by NCBI (Macaca_fascicularis_5.0, 2013-06-12) and stored in Biostrings objects.

Full genome sequences for Macaca fascicularis (Crab-eating macaque) as provided by NCBI (assembly Macaca_fascicularis_6.0, assembly accession GCA_011100615.1) and stored in Biostrings objects.

This package provides a functionality to work with recurrence rules for calendar dates. It offers a complete implementation of the RFC 2445 specification.

Minitest-global_expectations allows continued use of expectation methods on all objects. Calling expectation methods on all objects was deprecated in minitest 5.12, and is planned to be removed from minitest 6.

Function bipmod() that partitions a bipartite network into non-overlapping biclusters by maximizing bipartite modularity defined in Barber (2007) <doi:10.1103/PhysRevE.76.066102> using the bipartite version of the algorithm described in Treviño (2015) <doi:10.1088/1742-5468/2015/02/P02003>.

ColReorder adds the ability for the end user to be able to reorder columns in a DataTable through a click and drag operation. This can be useful when presenting data in a table, letting the user move columns that they wish to compare next to each other for easier comparison

go-reuseport enables listening and dialing from the same TCP or UDP port. This means that SO_REUSEADDR and SO_REUSEPORT socket options may be set. This is particularly important when attempting to do TCP NAT hole-punching, which requires a process to both Listen and Dial on the same TCP port. go-reuseport provides some utilities around enabling this behaviour on various operating systems.

Simulating the sequential multi-arm multi-stage or platform trial with Bayesian approach using the rstan package, which provides the R interface for the Stan. This package supports fixed ratio and Bayesian adaptive randomization approaches for randomization. Additionally, it allows for the study of time trend problems in platform trials. There are demos available for a multi-arm multi-stage trial with two different null scenarios, as well as for Bayesian trial cutoff screening. The Bayesian adaptive randomisation approaches are described in: Trippa et al. (2012) <doi:10.1200/JCO.2011.39.8420> and Wathen et al. (2017) <doi:10.1177/1740774517692302>. The randomisation algorithm is described in: Zhao W <doi:10.1016/j.cct.2015.06.008>. The analysis methods of time trend effect in platform trial are described in: Saville et al. (2022) <doi:10.1177/17407745221112013> and Bofill Roig et al. (2022) <doi:10.1186/s12874-022-01683-w>.

This package provides a repository implementation that uses an RDF4J SAIL stack.

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

Blackfriday is a Markdown processor in Go.

This package provides a WebSocket server for Ruby.

Regenerate sets for Unicode properties and values.

Trivial macro to define records and appropriate printers

This package provides P2P routing implementations for IPFS development.

This package provides a common API for query parsers in RDF4J.

This package provides a library for reading RAR archives with Golang.