This package provides full genome sequences for Homo sapiens as provided by UCSC (hg19, February 2009) and stored in Biostrings objects.

Develop Nonlinear Mixed Effects (NLME) models for pharmacometrics using a shiny interface. The Pharmacometric Modeling Language (PML) code updates in real time given changes to user inputs. Models can be executed using the Certara.RsNLME package. Additional support to generate the underlying Certara.RsNLME code to recreate the corresponding model in R is provided in the user interface.

This package provides full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings objects.

This package provides full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, July 2007) and stored in Biostrings objects.

This package provides full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.

Full genome sequences for Mustela putorius furo (Ferret) as provided by UCSC (musFur1, Apr. 2011) and stored in Biostrings objects.

Simulate an angler population, sample the simulated population with a user-specified survey times, and calculate metrics from a bus route-type creel survey.

This package includes details on variants for each probe on the 450k bead chip for each of the four populations (Asian, American, African and European).

ring provides a high performance and thread safe Go implementation of a bloom filter.

This package is a simple tracing application that logs messages depending on environment variables. It is very much inspired by git's GIT_TRACE mechanism.

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

This module provides conflicts checking for Module::Runtime, which had a recent release that broke some versions of Moose. It is called from Moose::Conflicts and moose-outdated.

Package vaxis is a terminal user interface for modern terminals. It supports supports modern terminal features, such as styled underlines and graphics. A widgets package is provided with some useful widgets.

This package facilitates the BusyBox style reexec of a binary. Handlers can be registered with a name and the argv 0 of the exec of the binary will be used to find and execute custom init paths.

This package contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

go-opt is a library to parse command line arguments based on tag annotations on struct fields. It came as a spin-off from aerc to deal with its internal commands.

This package provides a toolbox to create a particle swarm optimisation (PSO), the package contains two classes: the Particle and the Particle Swarm, this two class are used to run the PSO with methods to easily print, plot and save the result.

Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.

This package provides methods to calculate sample size for single-arm survival studies using the arcsine transformation, incorporating uniform accrual and exponential survival assumptions. Includes functionality for detailed numerical integration and simulation. This method is based on Nagashima et al. (2021) <doi:10.1002/pst.2090>.

A farmer is to ferry across a river a goat, a cabbage, and a wolf. The boat allows the farmer to carry only one of the three at a time. Without supervision, the goat will gobble the cabbage whereas the wolf will not hesitate to feast on the goat.

This is a very simple OpenSMTPD filter for rewriting email address in both MAIL FROM command and From header in all messages with the specified email address. It’s useful when you want to ensure that all the relayed messages will be “send from” some no-reply email address.

An implementation of the Harris Corner Detection as described in the paper "An Analysis and Implementation of the Harris Corner Detector" by Sánchez J. et al (2018) available at <doi:10.5201/ipol.2018.229>. The package allows to detect relevant points in images which are characteristic to the digital image.

This package provides a dataset of the top colours of photos from Instagram taken in 2014 in the city of Vancouver, British Columbia, Canada. It consists of: top colour and counts data. This data was obtained using the Instagram API. Instagram is a web photo sharing service. It can be found at: <https://instagram.com>. The Instagram API is documented at: <https://instagram.com/developer/>.

This package provides a way to REPL into a new Firefox instance's JavaScript engine. A new throwaway Firefox profile directory is created before each run, so you won't need to modify your existing profiles. This mode takes care of starting the new Firefox process in debugging mode, which may be tedious to do by hand. This comint mode is barebones and unstructured, meant for quick JavaScript experiments.