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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-sasr 0.1.5
Propagated dependencies: r-reticulate@1.44.1 r-lifecycle@1.0.4 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/insightsengineering/sasr/
Licenses: ASL 2.0
Build system: r
Synopsis: 'SAS' Interface
Description:

This package provides a SAS interface, through SASPy'(<https://sassoftware.github.io/saspy/>) and reticulate'(<https://rstudio.github.io/reticulate/>). This package helps you create SAS sessions, execute SAS code in remote SAS servers, retrieve execution results and log, and exchange datasets between SAS and R'. It also helps you to install SASPy and create a configuration file for the connection. Please review the SASPy license file as instructed so that you comply with its separate and independent license.

r-spatsurv 2.0-1
Propagated dependencies: r-survival@3.8-3 r-stringr@1.6.0 r-spatstat-random@3.4-3 r-spatstat-geom@3.6-1 r-spatstat-explore@3.6-0 r-sp@2.2-0 r-sf@1.0-23 r-rcolorbrewer@1.1-3 r-raster@3.6-32 r-matrix@1.7-4 r-lubridate@1.9.4 r-iterators@1.0.14 r-fields@17.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spatsurv
Licenses: GPL 3
Build system: r
Synopsis: Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models
Description:

Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models. See Benjamin M. Taylor, Barry S. Rowlingson (2017) <doi:10.18637/jss.v077.i04>.

r-statiovar 0.1.3
Propagated dependencies: r-rlang@1.1.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/g-corbelli/statioVAR
Licenses: GPL 3
Build system: r
Synopsis: Trend Removal for Vector Autoregressive Workflows
Description:

Detrending multivariate time-series to approximate stationarity when dealing with intensive longitudinal data, prior to Vector Autoregressive (VAR) or multilevel-VAR estimation. Classical VAR assumes weak stationarity (constant first two moments), and deterministic trends inflate spurious autocorrelation, biasing Granger-causality and impulse-response analyses. All functions operate on raw panel data and write detrended columns back to the data set, but differ in the level at which the trend is estimated. See, for instance, Wang & Maxwell (2015) <doi:10.1037/met0000030>; Burger et al. (2022) <doi:10.4324/9781003111238-13>; Epskamp et al. (2018) <doi:10.1177/2167702617744325>.

r-shoppingwords 0.1.0
Propagated dependencies: r-tibble@3.3.0 r-stringi@1.8.7 r-stringdist@0.9.15 r-stopwords@2.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://bkanx.github.io/shoppingwords/
Licenses: Expat
Build system: r
Synopsis: Text Processing Tools for Turkish E-Commerce Data
Description:

This package provides several datasets useful for processing and analysis of text in Turkish from an online shopping platform.

r-sbtools 1.4.1
Propagated dependencies: r-mime@0.13 r-keyring@1.4.1 r-jsonlite@2.0.0 r-httr@1.4.7 r-curl@7.0.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/DOI-USGS/sbtools
Licenses: CC0
Build system: r
Synopsis: USGS ScienceBase Tools
Description:

This package provides tools for interacting with U.S. Geological Survey ScienceBase <https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.

r-stratus 1.1.2
Propagated dependencies: r-rcppalgos@2.9.3 r-phangorn@2.12.1 r-igraph@2.2.1 r-gmp@0.7-5 r-ggtree@4.0.1 r-ggplot2@4.0.1 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://github.com/mdhall272/STraTUS/
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny
Description:

For a single, known pathogen phylogeny, provides functions for enumeration of the set of compatible epidemic transmission trees, and for uniform sampling from that set. Optional arguments allow for incomplete sampling with a known number of missing individuals, multiple sampling, and known infection time limits. Always assumed are a complete transmission bottleneck and no superinfection or reinfection. See Hall and Colijn (2019) <doi:10.1093/molbev/msz058> for methodology.

r-saery 2.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=saery
Licenses: GPL 2
Build system: r
Synopsis: Small Area Estimation for Rao and Yu Model
Description:

This package provides functions to calculate EBLUPs (Empirical Best Linear Unbiased Predictor) estimators and their MSEs (Mean Squared Errors). Estimators are based on an area-level linear mixed model introduced by Rao and Yu (1994) <doi:10.2307/3315407>. The REML (Residual Maximum Likelihood) method is used for fitting the model.

r-sparsereg 1.2
Propagated dependencies: r-vgam@1.1-13 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-msm@1.8.2 r-mcmcpack@1.7-1 r-mass@7.3-65 r-gridextra@2.3 r-glmnet@4.1-10 r-gigrvg@0.8 r-ggplot2@4.0.1 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sparsereg
Licenses: GPL 2+
Build system: r
Synopsis: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data
Description:

Sparse modeling provides a mean selecting a small number of non-zero effects from a large possible number of candidate effects. This package includes a suite of methods for sparse modeling: estimation via EM or MCMC, approximate confidence intervals with nominal coverage, and diagnostic and summary plots. The method can implement sparse linear regression and sparse probit regression. Beyond regression analyses, applications include subgroup analysis, particularly for conjoint experiments, and panel data. Future versions will include extensions to models with truncated outcomes, propensity score, and instrumental variable analysis.

r-smallarea 0.1
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=smallarea
Licenses: GPL 2+
Build system: r
Synopsis: Fits a Fay Herriot Model
Description:

Inference techniques for Fay Herriot Model.

r-simpletex 1.0.5
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7 r-glue@1.8.0 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/chuxinyuan/simpletex
Licenses: Expat
Build system: r
Synopsis: Mathematical Formulas and Character Recognition
Description:

By calling the SimpleTex <https://simpletex.cn/> open API implements text and mathematical formula recognition on the image, and the output formula can be used directly with Markdown and LaTeX'.

r-semboottools 0.1.1
Propagated dependencies: r-psych@2.5.6 r-lavaan-printer@0.1.0 r-lavaan@0.6-20 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://Yangzhen1999.github.io/semboottools/
Licenses: GPL 3+
Build system: r
Synopsis: Bootstrapping Helpers for Structural Equation Modelling
Description:

This package provides a collection of helper functions for forming bootstrapping confidence intervals and examining bootstrap estimates in structural equation modelling. Currently supports models fitted by the lavaan package by Rosseel (2012) <doi: 10.18637/jss.v048.i02>.

r-scinsight 0.1.5
Propagated dependencies: r-stringr@1.6.0 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rann@2.6.2 r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/Vivianstats/scINSIGHT
Licenses: GPL 3
Build system: r
Synopsis: Interpretation of Heterogeneous Single-Cell Gene Expression Data
Description:

We develop a novel matrix factorization tool named scINSIGHT to jointly analyze multiple single-cell gene expression samples from biologically heterogeneous sources, such as different disease phases, treatment groups, or developmental stages. Given multiple gene expression samples from different biological conditions, scINSIGHT simultaneously identifies common and condition-specific gene modules and quantify their expression levels in each sample in a lower-dimensional space. With the factorized results, the inferred expression levels and memberships of common gene modules can be used to cluster cells and detect cell identities, and the condition-specific gene modules can help compare functional differences in transcriptomes from distinct conditions. Please also see Qian K, Fu SW, Li HW, Li WV (2022) <doi:10.1186/s13059-022-02649-3>.

r-scryr 1.0.0
Propagated dependencies: r-tibble@3.3.0 r-purrr@1.2.0 r-httr@1.4.7 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://curso-r.github.io/scryr/
Licenses: Expat
Build system: r
Synopsis: An Interface to the 'Scryfall' API
Description:

This package provides a simple, light, and robust interface between R and the Scryfall card data API <https://scryfall.com/docs/api>.

r-sasmixed 1.0-4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SASmixed
Licenses: GPL 2+
Build system: r
Synopsis: Data sets from "SAS System for Mixed Models"
Description:

Data sets and sample lmer analyses corresponding to the examples in Littell, Milliken, Stroup and Wolfinger (1996), "SAS System for Mixed Models", SAS Institute.

r-sparsegl 1.1.1
Propagated dependencies: r-tidyr@1.3.1 r-rspectra@0.16-2 r-rlang@1.1.6 r-matrix@1.7-4 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-dotcall64@1.2 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/dajmcdon/sparsegl
Licenses: Expat
Build system: r
Synopsis: Sparse Group Lasso
Description:

Efficient implementation of sparse group lasso with optional bound constraints on the coefficients; see <doi:10.18637/jss.v110.i06>. It supports the use of a sparse design matrix as well as returning coefficient estimates in a sparse matrix. Furthermore, it correctly calculates the degrees of freedom to allow for information criteria rather than cross-validation with very large data. Finally, the interface to compiled code avoids unnecessary copies and allows for the use of long integers.

r-stratpal 0.7.1
Propagated dependencies: r-paleots@0.6.2 r-admtools@0.6.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://mindthegap-erc.github.io/StratPal/
Licenses: FSDG-compatible
Build system: r
Synopsis: Stratigraphic Paleobiology Modeling Pipelines
Description:

The fossil record is a joint expression of ecological, taphonomic, evolutionary, and stratigraphic processes (Holland and Patzkowsky, 2012, ISBN:978-0226649382). This package allowing to simulate biological processes in the time domain (e.g., trait evolution, fossil abundance, phylogenetic trees), and examine how their expression in the rock record (stratigraphic domain) is influenced based on age-depth models, ecological niche models, and taphonomic effects. Functions simulating common processes used in modeling trait evolution, biostratigraphy or event type data such as first/last occurrences are provided and can be used standalone or as part of a pipeline. The package comes with example data sets and tutorials in several vignettes, which can be used as a template to set up one's own simulation.

r-slidecna 0.1.0
Propagated dependencies: r-tidyselect@1.2.1 r-tibble@3.3.0 r-stringr@1.6.0 r-seurat@5.3.1 r-scales@1.4.0 r-reshape2@1.4.5 r-pheatmap@1.0.13 r-mltools@0.3.5 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-futile-logger@1.4.3 r-factoextra@1.0.7 r-dplyr@1.1.4 r-dendextend@1.19.1 r-data-table@1.17.8 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SlideCNA
Licenses: GPL 3+
Build system: r
Synopsis: Calls Copy Number Alterations from Slide-Seq Data
Description:

This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about SlideCNA is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package enrichR (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR").

r-screenshotbase 0.1.0
Propagated dependencies: r-httr2@1.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://screenshotbase.com
Licenses: Expat
Build system: r
Synopsis: Client for the 'Screenshotbase' API
Description:

Minimal R client for the Screenshotbase API to render website screenshots and query account status. Provides functions to set the API key, call the status endpoint, and take a screenshot as a raw image response.

r-sparrpowr 0.2.9
Propagated dependencies: r-terra@1.8-86 r-spatstat-random@3.4-3 r-spatstat-geom@3.6-1 r-sparr@2.3-16 r-lifecycle@1.0.4 r-iterators@1.0.14 r-future@1.68.0 r-foreach@1.5.2 r-fields@17.1 r-dorng@1.8.6.2 r-dofuture@1.1.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/machiela-lab/sparrpowR
Licenses: ASL 2.0
Build system: r
Synopsis: Power Analysis to Detect Spatial Relative Risk Clusters
Description:

Calculate the statistical power to detect clusters using kernel-based spatial relative risk functions that are estimated using the sparr package. Details about the sparr package methods can be found in the tutorial: Davies et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.

r-subsemble 0.1.0
Propagated dependencies: r-superlearner@2.0-29
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ledell/subsemble
Licenses: ASL 2.0
Build system: r
Synopsis: An Ensemble Method for Combining Subset-Specific Algorithm Fits
Description:

The Subsemble algorithm is a general subset ensemble prediction method, which can be used for small, moderate, or large datasets. Subsemble partitions the full dataset into subsets of observations, fits a specified underlying algorithm on each subset, and uses a unique form of k-fold cross-validation to output a prediction function that combines the subset-specific fits. An oracle result provides a theoretical performance guarantee for Subsemble. The paper, "Subsemble: An ensemble method for combining subset-specific algorithm fits" is authored by Stephanie Sapp, Mark J. van der Laan & John Canny (2014) <doi:10.1080/02664763.2013.864263>.

r-ssn2 0.4.0
Propagated dependencies: r-withr@3.0.2 r-tibble@3.3.0 r-spmodel@0.12.0 r-sf@1.0-23 r-rsqlite@2.4.4 r-matrix@1.7-4 r-itertools@0.1-3 r-iterators@1.0.14 r-generics@0.1.4 r-foreach@1.5.2 r-filematrix@1.3 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://usepa.github.io/SSN2/
Licenses: GPL 3
Build system: r
Synopsis: Spatial Modeling on Stream Networks
Description:

Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance (Ver Hoef, J.M. and Peterson, E.E., (2010) <DOI:10.1198/jasa.2009.ap08248>.) Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.

r-sudoku 2.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sudoku
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sudoku Puzzle Generator and Solver
Description:

Generates, plays, and solves Sudoku puzzles. The GUI playSudoku() needs package "tkrplot" if you are not on Windows.

r-survmixer 1.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=survmixer
Licenses: GPL 3
Build system: r
Synopsis: Design of Clinical Trials with Survival Endpoints Based on Binary Responses
Description:

Sample size and effect size calculations for survival endpoints based on mixture survival-by-response model. The methods implemented can be found in Bofill, Shen & Gómez (2021) <arXiv:2008.12887>.

r-surveygraph 1.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/surveygraph/surveygraphr
Licenses: Expat
Build system: r
Synopsis: Network Representations of Attitudes
Description:

This package provides a tool for computing network representations of attitudes, extracted from tabular data such as sociological surveys. Development of surveygraph software and training materials was initially funded by the European Union under the ERC Proof-of-concept programme (ERC, Attitude-Maps-4-All, project number: 101069264). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

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Total results: 69112