Produce small area population estimates by fitting census data to survey data.

Create structured, formatted HTML tables of in a flexible and convenient way.

MFA models genomic bifurcations using a Bayesian hierarchical mixture of factor analysers.

RAxML is a tool for phylogenetic analysis and post-analysis of large phylogenies.

This package lets you generate random or human readable and pronounceable identifiers.

This package provides power analysis functions along the lines of Cohen (1988).

Three methods to calculate R2 for models with correlated errors, including Phylogenetic GLS, Phylogenetic Logistic Regression, Linear Mixed Models (LMMs), and Generalized Linear Mixed Models (GLMMs). See details in Ives 2018 <doi:10.1093/sysbio/syy060>.

This package provides efficient functions for detecting multiple change points in multidimensional time series. The models can be piecewise constant or polynomial. Adaptive threshold selection methods are available, see Fan and Wu (2024) <arXiv:2403.00600>.

This package performs analysis of polynomial regression in simple designs with quantitative treatments.

Genome-wide association analysis that accommodate membership information, variance adjustment, and correlated responses.

Calculates the normalized mutual information (NMI) of two community structures in network analysis.

Generate Stochastic Branching Networks ('SBNs'). Used to model the branching structure of rivers.

Computes the studentized midrange distribution (pdf, cdf and quantile) and generates random numbers.

This package offers an interactive function for the detection of breakpoints in series.

This package provides tools for categorical data analysis with complete or missing responses.

This package provides functions and data to construct technical trading rules with R.

This package provides a series of functions in some way considered useful to the author. These include methods for subsetting tables and generating indices for arrays, conditioning and intervening in probability distributions, generating combinations, fast transformations, and more...

This package provides a friendly interface for the construction of regular expressions. Regular expressions are a very powerful feature, however they are often difficult to interpret. Rex allows you to build complex regular expressions from human readable expressions

Implementation of a Recurrent Neural Network architectures in native R, including Long Short-Term Memory (Hochreiter and Schmidhuber, <doi:10.1162/neco.1997.9.8.1735>), Gated Recurrent Unit (Chung et al., <arXiv:1412.3555>) and vanilla RNN.

Plot party trees in left-right orientation instead of the classical top-down layout.

This package provides functions to test and compare causal models using Confirmatory Path Analysis.

Gradient-Enhanced Kriging as an emulator for computer experiments based on Maximum-Likelihood estimation.

Computes multiple correlation coefficient when the data matrix is given and tests its significance.

Efficient procedures for fitting and cross-validating the structurally-regularized time-dependent Cox models.