_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
u-boot-rpi-arm64-efi 2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

r-delayedmatrixstats 1.30.0
Propagated dependencies: r-delayedarray@0.34.1 r-iranges@2.42.0 r-matrix@1.7-3 r-matrixgenerics@1.20.0 r-s4vectors@0.46.0 r-sparsearray@1.8.0 r-sparsematrixstats@1.20.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/PeteHaitch/DelayedMatrixStats
Licenses: Expat
Synopsis: Functions that apply to rows and columns of DelayedMatrix objects
Description:

This package provides a port of the matrixStats API for use with DelayedMatrix objects from the DelayedArray package. It contains high-performing functions operating on rows and columns of DelayedMatrix objects, e.g. colMedians, rowMedians, colRanks, rowRanks, colSds, and rowSds. Functions are optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

u-boot-rpi-2-efi-bin 2025.01
Dependencies: u-boot-rpi-2-efi@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

texlive-resolsysteme 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://ctan.org/pkg/resolsysteme
Licenses: LPPL 1.3c
Synopsis: Work on linear systems using xint or pyluatex
Description:

This package provides some commands (in French) to perform calculations on small (2x2 or 3x3 or 4x4) linear systems, with xint or pyluatex:

  • \DetMatrice or \DetMatricePY to display the determinant of a matrix;

  • \MatriceInverse or \MatriceInversePY to display the inverse of a matrix;

  • \SolutionSysteme or \SolutionSystemePY to display the solution of a linear system;

r-public-ctn0094data 1.0.6
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://ctn-0094.github.io/public.ctn0094data/
Licenses: Expat
Synopsis: De-Identified Data from CTN-0094
Description:

These are harmonized datasets produced as part of the Clinical Trials Network (CTN) protocol number 0094. This is a US National Institute of Drug Abuse (NIDA) funded project; to learn more go to <https://ctnlibrary.org/protocol/ctn0094/>. These are datasets which have the data harmonized from CTN-0027 (<https://ctnlibrary.org/protocol/ctn0027/>), CTN-0030 (<https://ctnlibrary.org/protocol/ctn0030/>), and CTN-0051 (<https://ctnlibrary.org/protocol/ctn0051/>).

r-multipleregression 0.1.0
Propagated dependencies: r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=MultipleRegression
Licenses: GPL 3
Synopsis: Multiple Regression Analysis
Description:

This package provides tools to analysis of experiments having two or more quantitative explanatory variables and one quantitative dependent variable. Experiments can be without repetitions or with a statistical design (Hair JF, 2016) <ISBN: 13: 978-0138132637>. Pacote para uma analise de experimentos havendo duas ou mais variaveis explicativas quantitativas e uma variavel dependente quantitativa. Os experimentos podem ser sem repeticoes ou com delineamento estatistico (Hair JF, 2016) <ISBN: 13: 978-0138132637>.

emacs-citar-org-roam 0.5.1
Propagated dependencies: emacs-citar@1.4.0 emacs-org-roam@2.3.0
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/emacs-citar/citar-org-roam
Licenses: GPL 3+
Synopsis: Emacs package to provide tighter Citar and Org-Roam integration
Description:

Out-of-box, Citar provides default support for file-per-note bibliographic notes that are compatible with Org-Roam v2. This package integrates directly with the Org-Roam database, and provides the following additional features to Citar note support:

  • multiple references per note

  • multiple reference notes per file

  • ability to query note citations by reference

  • ``live'' updating of Citar UI for presence of notes

r-wordlistsanalytics 0.2.4
Propagated dependencies: r-shiny@1.10.0 r-reshape2@1.4.4 r-readr@2.1.5 r-lsa@0.73.3 r-ggplot2@3.5.2 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/w.scm (guix-cran packages w)
Home page: https://cran.r-project.org/package=WordListsAnalytics
Licenses: GPL 3+
Synopsis: Multiple Data Analysis Tools for Property Listing Tasks
Description:

Application to estimate statistical values using properties provided by a group of individuals to describe concepts using shiny'. It estimates the underlying distribution to generate new descriptive words Canessa et al. (2023) <doi:10.3758/s13428-022-01811-w>, applies a new clustering model, and uses simulations to estimate the probability that two persons describe the same words based on their descriptions Canessa et al. (2022) <doi:10.3758/s13428-022-02030-z>.

r-krippendorffsalpha 2.0
Channel: guix-cran
Location: guix-cran/packages/k.scm (guix-cran packages k)
Home page: http://www.johnhughes.org
Licenses: GPL 2+
Synopsis: Measuring Agreement Using Krippendorff's Alpha Coefficient
Description:

This package provides tools for applying Krippendorff's Alpha methodology <DOI:10.1080/19312450709336664>. Both the customary methodology and Hughes methodology <DOI:10.48550/arXiv.2210.13265> are supported, the former being preferred for larger datasets, the latter for smaller datasets. The framework supports common and user-defined distance functions, and can accommodate any number of units, any number of coders, and missingness. Interval estimation can be done in parallel for either methodology.

r-intrinsicdimension 1.2.0
Propagated dependencies: r-yaimpute@1.0-34.1
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://cran.r-project.org/package=intrinsicDimension
Licenses: Expat
Synopsis: Intrinsic Dimension Estimation
Description:

This package provides a variety of methods for estimating intrinsic dimension of data sets (i.e the manifold or Hausdorff dimension of the support of the distribution that generated the data) as reviewed in Johnsson, K. (2016, ISBN:978-91-7623-921-6) and Johnsson, K., Soneson, C. and Fontes, M. (2015) <doi:10.1109/TPAMI.2014.2343220>. Furthermore, to evaluate the performance of these estimators, functions for generating data sets with given intrinsic dimensions are provided.

r-nitrogenuptake2016 0.2.3
Propagated dependencies: r-zoo@1.8-14 r-mass@7.3-65 r-car@3.1-3
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/troyhill/NitrogenUptake2016
Licenses: GPL 3
Synopsis: Data and Source Code From: Nitrogen Uptake and Allocation Estimates for Spartina Alterniflora and Distichlis Spicata
Description:

This package contains data, code, and figures from Hill et al. 2018a (Journal of Experimental Marine Biology and Ecology; <DOI: 10.1016/j.jembe.2018.07.006>) and Hill et al. 2018b (Data In Brief <DOI: 10.1016/j.dib.2018.09.133>). Datasets document plant allometry, stem heights, nutrient and stable isotope content, and sediment denitrification enzyme assays. The data and analysis offer an examination of nitrogen uptake and allocation in two salt marsh plant species.

r-fuzzynumbers-ext-2 3.2
Propagated dependencies: r-fuzzynumbers@0.4-7
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=FuzzyNumbers.Ext.2
Licenses: LGPL 3+
Synopsis: Apply Two Fuzzy Numbers on a Monotone Function
Description:

One can easily draw the membership function of f(x,y) by package FuzzyNumbers.Ext.2 in which f(.,.) is supposed monotone and x and y are two fuzzy numbers. This work is possible using function f2apply() which is an extension of function fapply() from Package FuzzyNumbers for two-variable monotone functions. Moreover, this package has the ability of computing the core, support and alpha-cuts of the fuzzy-valued final result.

r-germinationmetrics 0.1.8
Propagated dependencies: r-rdpack@2.6.4 r-plyr@1.8.9 r-mathjaxr@1.8-0 r-gslnls@1.4.1 r-ggrepel@0.9.6 r-ggplot2@3.5.2 r-data-table@1.17.4 r-broom@1.0.8
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://github.com/aravind-j/germinationmetrics
Licenses: GPL 2 GPL 3
Synopsis: Seed Germination Indices and Curve Fitting
Description:

This package provides functions to compute various germination indices such as germinability, median germination time, mean germination time, mean germination rate, speed of germination, Timson's index, germination value, coefficient of uniformity of germination, uncertainty of germination process, synchrony of germination etc. from germination count data. Includes functions for fitting cumulative seed germination curves using four-parameter hill function and computation of associated parameters. See the vignette for more, including full list of citations for the methods implemented.

r-semnetdictionaries 0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/AlexChristensen/SemNetDictionaries
Licenses: GPL 3+
Synopsis: Dictionaries for the 'SemNetCleaner' Package
Description:

This package implements dictionaries that can be used in the SemNetCleaner package. Also includes several functions aimed at facilitating the text cleaning analysis in the SemNetCleaner package. This package is designed to integrate and update word lists and dictionaries based on each user's individual needs by allowing users to store and save their own dictionaries. Dictionaries can be added to the SemNetDictionaries package by submitting user-defined dictionaries to <https://github.com/AlexChristensen/SemNetDictionaries>.

r-highestmedianrules 1.0
Propagated dependencies: r-rmallow@1.1
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: https://cran.r-project.org/package=HighestMedianRules
Licenses: AGPL 3
Synopsis: Implementation of Voting Rules Electing the Candidate with Highest Median Grade
Description:

Computes the scores and ranks candidates according to voting rules electing the highest median grade. Based on "Tie-breaking the highest median: alternatives to the majority judgment", A. Fabre, Social Choice & Welfare (forthcoming as of 2020). The paper is available here: <https://github.com/bixiou/highest_median/raw/master/Tie-breaking%20Highest%20Median%20-%20Fabre%202019.pdf>. Functions to plot the voting profiles can be found on github: <https://github.com/bixiou/highest_median/blob/master/packages_functions_data.R>.

r-changepointtesting 1.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ChangepointTesting
Licenses: GPL 2
Synopsis: Change Point Estimation for Clustered Signals
Description:

This package provides a multiple testing procedure for clustered alternative hypotheses. It is assumed that the p-values under the null hypotheses follow U(0,1) and that the distributions of p-values from the alternative hypotheses are stochastically smaller than U(0,1). By aggregating information, this method is more sensitive to detecting signals of low magnitude than standard methods. Additionally, sporadic small p-values appearing within a null hypotheses sequence are avoided by averaging on the neighboring p-values.

r-aquaticlifehistory 1.0.5
Propagated dependencies: r-tidyr@1.3.1 r-rlist@0.4.6.2 r-readr@2.1.5 r-plyr@1.8.9 r-mumin@1.48.11 r-minpack-lm@1.2-4 r-mass@7.3-65 r-magrittr@2.0.3 r-ggplot2@3.5.2 r-dplyr@1.1.4 r-broom@1.0.8
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/jonathansmart/AquaticLifeHistory
Licenses: GPL 3
Synopsis: Life History Analysis Tools
Description:

Estimate aquatic species life history using robust techniques. This package supports users undertaking two types of analysis: 1) Growth from length-at-age data, and 2) maturity analyses for length and/or age data. Maturity analyses are performed using generalised linear model approaches incorporating either a binomial or quasibinomial distribution. Growth modelling is performed using the multimodel approach presented by Smart et al. (2016) "Multimodel approaches in shark and ray growth studies: strengths, weaknesses and the future" <doi:10.1111/faf.12154>.

ruby-google-protobuf 3.25.3
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://protobuf.dev
Licenses: Modified BSD
Synopsis: Protocol Buffers are Google's data interchange format
Description:

This library contains the Ruby extension that implements Protocol Buffers functionality in Ruby.

The Ruby extension makes use of generated Ruby code that defines message and enum types in a Ruby DSL. You may write definitions in this DSL directly, but we recommend using protoc's Ruby generation support with .proto files. The build process in this directory only installs the extension; you need to install protoc (in package ruby-grpc-tools) as well to have Ruby code generation functionality.

r-channelattribution 2.0.7
Propagated dependencies: r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://channelattribution.io
Licenses: GPL 3 FSDG-compatible
Synopsis: Markov Model for Online Multi-Channel Attribution
Description:

Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.

r-circularsilhouette 0.0.1
Propagated dependencies: r-rdpack@2.6.4 r-rcpp@1.0.14 r-optcirclust@0.0.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CircularSilhouette
Licenses: LGPL 3+
Synopsis: Fast Silhouette on Circular or Linear Data Clusters
Description:

Calculating silhouette information for clusters on circular or linear data using fast algorithms. These algorithms run in linear time on sorted data, in contrast to quadratic time by the definition of silhouette. When used together with the fast and optimal circular clustering method FOCC (Debnath & Song 2021) <doi:10.1109/TCBB.2021.3077573> implemented in R package OptCirClust', circular silhouette can be maximized to find the optimal number of circular clusters; it can also be used to estimate the period of noisy periodical data.

emacs-rrr-next-wo-nc 29.0.50-10.0804b61
Dependencies: libwebp@1.3.2 cairo@1.18.2 dbus@1.15.8 gtk+@3.24.43 giflib@5.2.1 harfbuzz@8.3.0 libjpeg-turbo@2.1.4 libotf@0.9.16 libpng@1.6.39 librsvg@2.58.5 libtiff@4.4.0 libx11@1.8.10 libxft@2.3.8 libxpm@3.5.17 libwebp@1.3.2 pango@1.54.0 poppler@22.09.0 gnutls@3.8.3 ld-wrapper@0 binutils@2.41 glibc@2.39 libgccjit@11.4.0 mailutils@3.19 acl@2.3.1 alsa-lib@1.2.11 elogind@255.17 ghostscript@9.56.1 gpm@1.20.7 jansson@2.14 lcms@2.13.1 libice@1.1.2 libselinux@3.4 libsm@1.2.5 libxml2@2.9.14 m17n-lib@1.8.0 sqlite@3.39.3 tree-sitter@0.20.10 zlib@1.3 bash-minimal@5.1.16 coreutils@9.1 findutils@4.9.0 gawk@5.3.0 gzip@1.13 ncurses@6.2.20210619 sed@4.8
Channel: rrr
Location: rrr/packages/emacs.scm (rrr packages emacs)
Home page: https://www.gnu.org/software/emacs/
Licenses: GPL 3+
Synopsis: The extensible, customizable, self-documenting text editor
Description:

GNU Emacs is an extensible and highly customizable text editor. It is based on an Emacs Lisp interpreter with extensions for text editing. Emacs has been extended in essentially all areas of computing, giving rise to a vast array of packages supporting, e.g., email, IRC and XMPP messaging, spreadsheets, remote server editing, and much more. Emacs includes extensive documentation on all aspects of the system, from basic editing to writing large Lisp programs. It has full Unicode support for nearly all human languages.

perl-graph-readwrite 2.09
Propagated dependencies: perl-graph@0.9704 perl-parse-yapp@1.21 perl-xml-parser@2.46 perl-xml-writer@0.900
Channel: guix
Location: gnu/packages/xml.scm (gnu packages xml)
Home page: https://metacpan.org/release/Graph-ReadWrite
Licenses: GPL 1+
Synopsis: Modules for reading and writing directed graphs
Description:

This is a collection of perl classes for reading and writing directed graphs in a variety of file formats. The graphs are represented in Perl using Jarkko Hietaniemi's Graph classes.

There are two base classes. Graph::Reader is the base class for classes which read a graph file and create an instance of the Graph class. Graph::Writer is the base class for classes which take an instance of the Graph class and write it out in a specific file format.

r-lfdrempiricalbayes 1.0
Propagated dependencies: r-r6@2.6.1 r-matrixstats@1.5.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://davidbickel.com
Licenses: GPL 3
Synopsis: Estimating Local False Discovery Rates Using Empirical Bayes Methods
Description:

New empirical Bayes methods aiming at analyzing the association of single nucleotide polymorphisms (SNPs) to some particular disease are implemented in this package. The package uses local false discovery rate (LFDR) estimates of SNPs within a sample population defined as a "reference class" and discovers if SNPs are associated with the corresponding disease. Although SNPs are used throughout this document, other biological data such as protein data and other gene data can be used. Karimnezhad, Ali and Bickel, D. R. (2016) <http://hdl.handle.net/10393/34889>.

r-patientprofilesvis 2.0.9
Dependencies: cairo@1.18.2
Propagated dependencies: r-stringr@1.5.1 r-scales@1.4.0 r-reshape2@1.4.4 r-plyr@1.8.9 r-knitr@1.50 r-gridextra@2.3 r-ggplot2@3.5.2 r-cowplot@1.1.3 r-clinutils@0.2.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/openanalytics/patientProfilesVis
Licenses: Expat
Synopsis: Visualization of Patient Profiles
Description:

Creation of patient profile visualizations for exploration, diagnostic or monitoring purposes during a clinical trial. These static visualizations display a patient-specific overview of the evolution during the trial time frame of parameters of interest (as laboratory, ECG, vital signs), presence of adverse events, exposure to a treatment; associated with metadata patient information, as demography, concomitant medication. The visualizations can be tailored for specific domain(s) or endpoint(s) of interest. Visualizations are exported into patient profile report(s) or can be embedded in custom report(s).

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Total results: 34014