Elasticsearch is an open-source, distributed, document-based datastore (<https://www.elastic.co/products/elasticsearch>). It provides an HTTP API for querying the database and extracting datasets, but that API was not designed for common data science workflows like pulling large batches of records and normalizing those documents into a data frame that can be used as a training dataset for statistical models. uptasticsearch provides an interface for Elasticsearch that is explicitly designed to make these data science workflows easy and fun.

The framework proposed in Jenul et al., (2022) <doi:10.1007/s10994-022-06221-9>, together with an interactive Shiny dashboard. UBayFS is an ensemble feature selection technique embedded in a Bayesian statistical framework. The method combines data and user knowledge, where the first is extracted via data-driven ensemble feature selection. The user can control the feature selection by assigning prior weights to features and penalizing specific feature combinations. UBayFS can be used for common feature selection as well as block feature selection.

Conduct unit root tests based on EViews (<https://eviews.com>) routines and report them in tables. EViews (Econometric Views) is a commercial software for econometrics.

This package provides half-normal plots, reference plots, and Pareto plots of effects from an unreplicated experiment, along with various pseudo-standard-error measures, simulated reference distributions, and other tools. Many of these methods are described in Daniel C. (1959) <doi:10.1080/00401706.1959.10489866> and/or Lenth R.V. (1989) <doi:10.1080/00401706.1989.10488595>, but some new approaches are added and integrated in one package.

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <doi:10.1016/j.jprot.2019.103613>.

The most used functions on IPEA (Instituto de Pesquisa Economica Aplicada). Most of functions deal with brazilian names. It can guess the women single's name, extract prepositions or extract the first name.

This package provides functions for uniform sampling of the environmental space, designed to assist species distribution modellers in gathering ecologically relevant pseudo-absence data. The method ensures balanced representation of environmental conditions and helps reduce sampling bias in model calibration. Based on the framework described by Da Re et al. (2023) <doi:10.1111/2041-210X.14209>.

This package provides a diverse collection of U.S. datasets encompassing various fields such as crime, economics, education, finance, energy, healthcare, and more. It serves as a valuable resource for researchers and analysts seeking to perform in-depth analyses and derive insights from U.S.-specific data.

In many phase I trials, the design goal is to find the dose associated with a certain target toxicity rate. In some trials, the goal can be to find the dose with a certain weighted sum of rates of various toxicity grades. For others, the goal is to find the dose with a certain mean value of a continuous response. This package provides the setup and calculations needed to run a dose-finding trial with non-binary endpoints and performs simulations to assess designâ s operating characteristics under various scenarios. Three dose finding designs are included in this package: unified phase I design (Ivanova et al. (2009) <doi:10.1111/j.1541-0420.2008.01045.x>), Quasi-CRM/Robust-Quasi-CRM (Yuan et al. (2007) <doi:10.1111/j.1541-0420.2006.00666.x>, Pan et al. (2014) <doi:10.1371/journal.pone.0098147>) and generalized BOIN design (Mu et al. (2018) <doi:10.1111/rssc.12263>). The toxicity endpoints can be handled with these functions including equivalent toxicity score (ETS), total toxicity burden (TTB), general continuous toxicity endpoints, with incorporating ordinal grade toxicity information into dose-finding procedure. These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose-limiting toxicity (DLT) rates, discrete or continuous toxicity score, and incorporate safety and/or stopping rules.

Verb-like functions to work with messy data, often derived from spreadsheets or parsed PDF tables. Includes functions for unwrapping values broken up across rows, relocating embedded grouping values, and to annotate meaningful formatting in spreadsheet files.

Algorithms for checking the accuracy of a clustering result with known classes, computing cluster validity indices, and generating plots for comparing them. The package is compatible with K-means, fuzzy C means, EM clustering, and hierarchical clustering (single, average, and complete linkage). The details of the indices in this package can be found in: J. C. Bezdek, M. Moshtaghi, T. Runkler, C. Leckie (2016) <doi:10.1109/TFUZZ.2016.2540063>, T. Calinski, J. Harabasz (1974) <doi:10.1080/03610927408827101>, C. H. Chou, M. C. Su, E. Lai (2004) <doi:10.1007/s10044-004-0218-1>, D. L. Davies, D. W. Bouldin (1979) <doi:10.1109/TPAMI.1979.4766909>, J. C. Dunn (1973) <doi:10.1080/01969727308546046>, F. Haouas, Z. Ben Dhiaf, A. Hammouda, B. Solaiman (2017) <doi:10.1109/FUZZ-IEEE.2017.8015651>, M. Kim, R. S. Ramakrishna (2005) <doi:10.1016/j.patrec.2005.04.007>, S. H. Kwon (1998) <doi:10.1049/EL:19981523>, S. H. Kwon, J. Kim, S. H. Son (2021) <doi:10.1049/ell2.12249>, G. W. Miligan (1980) <doi:10.1007/BF02293907>, M. K. Pakhira, S. Bandyopadhyay, U. Maulik (2004) <doi:10.1016/j.patcog.2003.06.005>, M. Popescu, J. C. Bezdek, T. C. Havens, J. M. Keller (2013) <doi:10.1109/TSMCB.2012.2205679>, S. Saitta, B. Raphael, I. Smith (2007) <doi:10.1007/978-3-540-73499-4_14>, A. Starczewski (2017) <doi:10.1007/s10044-015-0525-8>, Y. Tang, F. Sun, Z. Sun (2005) <doi:10.1109/ACC.2005.1470111>, N. Wiroonsri (2024) <doi:10.1016/j.patcog.2023.109910>, N. Wiroonsri, O. Preedasawakul (2023) <doi:10.48550/arXiv.2308.14785>, C. H. Wu, C. S. Ouyang, L. W. Chen, L. W. Lu (2015) <doi:10.1109/TFUZZ.2014.2322495>, X. Xie, G. Beni (1991) <doi:10.1109/34.85677> and Rousseeuw (1987) and Kaufman and Rousseeuw(2009) <doi:10.1016/0377-0427(87)90125-7> and <doi:10.1002/9780470316801> C. Alok. (2010).

Concise TAP <http://testanything.org/> compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.

Retrieve data from the UNESCO Institute for Statistics (UIS) API <https://api.uis.unesco.org/api/public/documentation/>. UIS provides public access to more than 4,000 indicators focusing on education, science and technology, culture, and communication.

This package provides a collection of data sets to accompany the textbook "Using R for Introductory Statistics," second edition.

Calculates a Mahalanobis distance for every row of a set of outcome variables (Mahalanobis, 1936 <doi:10.1007/s13171-019-00164-5>). The conditional Mahalanobis distance is calculated using a conditional covariance matrix (i.e., a covariance matrix of the outcome variables after controlling for a set of predictors). Plotting the output of the cond_maha() function can help identify which elements of a profile are unusual after controlling for the predictors.

Returns a data frame with the names of the input data points and hex colors (or CIELab coordinates). Data can be mapped to colors for use in data visualization. It optimally maps data points into a polygon that represents the CIELab colour space. Since Euclidean distance approximates relative perceptual differences in CIELab color space, the result is a color encoding that aims to capture much of the structure of the original data.

Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR), Student's t Mixture Autoregressive (StMAR), and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models, quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes. Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>, Mika Meitz, Daniel Preve, Pentti Saikkonen (2023) <doi:10.1080/03610926.2021.1916531>, Savi Virolainen (2022) <doi:10.1515/snde-2020-0060>.

This package provides S3 generic methods and some default implementations for Bayesian analyses that generate Markov Chain Monte Carlo (MCMC) samples. The purpose of universals is to reduce package dependencies and conflicts. The nlist package implements many of the methods for its nlist class.

Provide a set of wrappers to call all the endpoints of UptimeRobot API which includes various kind of ping, keep-alive and speed tests. See <https://uptimerobot.com/> for more information.

Consistent with knitr syntax highlighting, usedthese adds a summary table of package & function usage to a Quarto document and enables aggregation of usage across a website.

This package provides methods for managing under- and over-enrollment in Simon's Two-Stage Design are offered by providing adaptive threshold adjustments and sample size recalibration. It also includes post-inference analysis tools to support clinical trial design and evaluation. The package is designed to enhance flexibility and accuracy in trial design, ensuring better outcomes in oncology and other clinical studies. Yunhe Liu, Haitao Pan (2024). Submitted.

This program realizes a universal estimation approach that accommodates multi-category variables and effect scales, making up for the deficiencies of the existing approaches when dealing with non-binary exposures and complex models. The estimation via bootstrapping can simultaneously provide results of causal mediation on risk difference (RD), odds ratio (OR) and risk ratio (RR) scales with tests of the effects difference. The estimation is also applicable to many other settings, e.g., moderated mediation, inconsistent covariates, panel data, etc. The high flexibility and compatibility make it possible to apply for any type of model, greatly meeting the needs of current empirical researches.

This package provides tools for fitting and assessing Bayesian multilevel regression models that account for unmeasured confounders.

This package provides a tool to define the rare biosphere. ulrb solves the problem of the definition of rarity by replacing arbitrary thresholds with an unsupervised machine learning algorithm (partitioning around medoids, or k-medoids). This algorithm works for any type of microbiome data, provided there is an abundance table. This method also works for non-microbiome data.