Use the high-precision arithmetic provided by the R package Rmpfr to compute a custom-made Gauss quadrature nodes and weights, with up to 33 nodes, using a moment-based method via moment determinants. Paul Kabaila (2022) <arXiv:2211.04729>.

Statistical methodology for sparse multivariate extreme value models. Methods are provided for exact simulation and statistical inference for multivariate Pareto distributions on graphical structures as described in the paper Graphical Models for Extremes by Engelke and Hitz (2020) <doi:10.1111/rssb.12355>.

This package provides a combined slider and numeric input for usage in a Shiny app. The slider and the numeric input are linked together: each one is updated when the other one changes. Many styling properties are customizable (e.g. colors and size).

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

minitest-focus gives the ability focus on a few tests with ease without having to use command-line arguments. It introduces a focus class method for use in testing classes, specifying that the next defined test is to be run.

The WWW::RobotRules module parses /robots.txt files as specified in "A Standard for Robot Exclusion", at <http://www.robotstxt.org/wc/norobots.html>. Webmasters can use the /robots.txt file to forbid conforming robots from accessing parts of their web site.

Real life data is muddy, fuzzy and unpredictable. This makes data manipulations tedious and bringing the data to right shape alone is a major chunk of work. Functions in this package help us get an understanding of dataframes to dramatically reduces data coding time.

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The epivizrServer package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Snapbox is a snapshot-testing toolbox that is ready to use for verifying output from

• Function return values

• CLI stdout/stderr

• Filesystem changes

It is also flexible enough to build your own test harness like trycmd.

Snapbox is a snapshot-testing toolbox that is ready to use for verifying output from

• Function return values

• CLI stdout/stderr

• Filesystem changes

It is also flexible enough to build your own test harness like trycmd.

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

This package provides the p-value for a joint test of association between a phenotype and a set of genetic variants (SNPs) by combining marginal p-values using the Fisher method. See Fisher, R.A. (1925,ISBN:0-05-002170-2) Statistical Methods for Research Workers.

Computation and visualization of matrix correlation coefficients. The main method is the Similarity of Matrices Index, while various related measures like r1, r2, r3, r4, Yanai's GCD, RV, RV2, adjusted RV, Rozeboom's linear correlation and Coxhead's coefficient are included for comparison and flexibility.

This package provides a tm Source to create corpora from a corpus prepared in the format used by the Alceste application (i.e. a single text file with inline meta-data). It is able to import both text contents and meta-data (starred) variables.

Provides functions which facilitate writing multi-file Emacs packages and running from the source tree without having to "install" code or fiddle with {load-path

Third parties often change the page numbers without rerunning makeindex. One would like to make the page numbers in the index entries more robust. This bundle provides robustindex.sty and robustglossary.sty, which use the \pageref mechanism to maintain correct page numbers.

parinfer-rust-emacs is an Emacs-centric fork of parinfer-rust, itself an implementation of Shaun Lebron’s Parinfer. This builds a shared library intended to be loaded by the emacs-parinfer-rust-mode Emacs plugin, though a standalone binary is built also.

This package provides classes and methods that allow the user to manage life table, actuarial tables (also multiple decrements tables). Moreover, functions to easily perform demographic, financial and actuarial mathematics on life contingencies insurances calculations are contained therein. See Spedicato (2013) <doi:10.18637/jss.v055.i10>.

This package provides functions for reading (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and writing (tab, csv, mMass MSD, mzML, imzML) different file formats of mass spectrometry data into/from MALDIquant objects.

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

repl-utilities is a set of utilities which ease life at the REPL. It includes three sorts of features: introspective procedures, miscellaneous utility functions, and, pulling them together, methods to conveniently keep these symbols and optionally additional symbols available in whichever package you switch to.

This package provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

runewidth provides functions to get fixed width of the character or string. It is a fork of https://github.com/mattn/go-runewidth, updated to the newest Unicode and having various helper functions removed, so all that remains is just the runewidth.RuneWidth() function.

The Read activity allows the laptop to act as a book reader. It has a simple interface, and will view many kinds of text and image-based book-like materials. It will have particular strengths in handheld mode, with extremely low power consumption and simple navigation controls.