MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services.

This package provides visualization functionality for untargeted LC-MS metabolomics research. Includes quality control visualizations, feature-wise visualizations and results visualizations.

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

The data employed in the vignette of the QUBIC package. These data belong to Many Microbe Microarrays Database and STRING v10.

Data such as is contained in the two R data files in this package are required for the RITAN package examples. Users are highly encouraged to use their own or additional resources in conjunction with RITANdata. See the RITAN vignettes and RITAN.md for more information, such as gathering more up-to-date annotation data.

This package infers and discriminates RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.

This package contains simple routines for finding roots, or zeros, of scalar functions of a single real variable using floating-point math.

This package provides tools to identify cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection.

This package provides a GUI for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

The r-zoeppritz package calculates and plots scattering matrix coefficients or scattering amplitudes, for seismological P and S-waves at an interface.

This package is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.

BOOST-RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracking VM.

Loofah is a general library for manipulating and transforming HTML/XML documents and fragments. It's built on top of Nokogiri and libxml2.

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

The biobtreeR package provides an interface to biobtree, a tool which covers large sets of bioinformatics datasets and allows search and chain mappings functionalities.

This package provides functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text.

This package provides a system for generating extendable and customizable heatmaps for exploring complex datasets, including big data and data with multiple data types.

This package provides tools for functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the g:Profiler toolkit.

This package provides an R Shiny application to create visual abstracts for original research. A variety of user defined options and formatting are included.

This package provides methods to create, store, access, and manipulate large matrices. Matrices are allocated to shared memory and may use memory-mapped files.

This is a package for constructing minimum-cost regular spanning subgraph as part of a non-parametric two-sample test for equality of distribution.

This light-weight package helps you track and visualize the progress of parallel versions of vectorized R functions of the mc*apply family.

This package provides a consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.